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bioconductor-rvisdiff
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public |
Interactive Graphs for Differential Expression
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2024-12-15 |
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pfp
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public |
Prefix Free Parsing.
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2024-12-15 |
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bioconductor-anvilaz
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public |
R / Bioconductor Support for the AnVIL Azure Platform
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2024-12-15 |
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lra
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public |
Long read aligner for sequences and contigs
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2024-12-15 |
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repdenovo
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public |
REPdenovo is designed for constructing repeats directly from sequence reads.
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2024-12-15 |
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bioconductor-anvil
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public |
Bioconductor on the AnVIL compute environment
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2024-12-15 |
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rcorrector
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public |
Rcorrector (RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non-uniform, such as single-cell sequencing.
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2024-12-15 |
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bioconductor-anvilgcp
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public |
The GCP R Client for the AnVIL
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2024-12-15 |
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livekraken
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public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
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2024-12-15 |
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bioconductor-basilisk.utils
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public |
Basilisk Installation Utilities
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2024-12-15 |
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howdesbt
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public |
Sequence Bloom Tree, supporting determined/how split filters
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2024-12-15 |
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leviathan
|
public |
Linked-reads based structural variant caller with barcode indexing
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2024-12-15 |
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r-virfinder
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public |
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
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2024-12-15 |
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kraken
|
public |
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2024-12-15 |
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r-nbpseq
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public |
Negative Binomial (NB) models for two-group comparisons and regression inferences from RNA-Sequencing Data.
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2024-12-15 |
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bioconductor-metapone
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public |
Conducts pathway test of metabolomics data using a weighted permutation test
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2024-12-15 |
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bioconductor-degseq
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public |
Identify Differentially Expressed Genes from RNA-seq data
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2024-12-15 |
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bioconductor-fobitools
|
public |
Tools for Manipulating the FOBI Ontology
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2024-12-15 |
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snk
|
public |
A Snakemake CLI and Workflow Management System.
|
2024-12-15 |
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xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2024-12-15 |
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bioconductor-rdisop
|
public |
Decomposition of Isotopic Patterns
|
2024-12-15 |
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bioconductor-projectr
|
public |
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
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2024-12-15 |
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bioconductor-alpsnmr
|
public |
Automated spectraL Processing System for NMR
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2024-12-15 |
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r-viscorvar
|
public |
Overlaying of Correlation Circles and Network of Correlated Variables
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2024-12-15 |
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bioconductor-retrofit
|
public |
RETROFIT: Reference-free deconvolution of cell mixtures in spatial transcriptomics
|
2024-12-15 |
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bioconductor-timeomics
|
public |
Time-Course Multi-Omics data integration
|
2024-12-15 |
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bioconductor-metapod
|
public |
Meta-Analyses on P-Values of Differential Analyses
|
2024-12-15 |
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primer3
|
public |
Design PCR primers from DNA sequence. From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it.
|
2024-12-15 |
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rapidshapes
|
public |
RapidShapes computes a thermodynamic matcher (TDM), using a runtime heuristic for probabilistic shape analysis.
|
2024-12-15 |
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bioconductor-lea
|
public |
LEA: an R package for Landscape and Ecological Association Studies
|
2024-12-15 |
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phcue-ck
|
public |
phcue-ck (pronounced "F-Q-Seek") is a simple tool to get FTP urls for FASTQ files on ENA.
|
2024-12-15 |
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palikiss
|
public |
pAliKiss predicts RNA secondary structures for fixed RNA multiple sequence alignments, with special attention for pseudoknotted structures.
|
2024-12-15 |
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fastqc-rs
|
public |
A fast quality control tool for FASTQ files written in rust.
|
2024-12-15 |
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gopeaks
|
public |
Peak caller for CUT&TAG data
|
2024-12-15 |
|
bioconductor-targetsearch
|
public |
A package for the analysis of GC-MS metabolite profiling data
|
2024-12-15 |
|
mupbwt
|
public |
A light pbwt-based index
|
2024-12-15 |
|
bioconductor-treeandleaf
|
public |
Displaying binary trees with focus on dendrogram leaves
|
2024-12-15 |
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fastqtk
|
public |
fastqtk is a fast and lightweight tool for interleaving/deinterleaving/counting/trimming FASTQ files.
|
2024-12-15 |
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bioconductor-panr
|
public |
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations
|
2024-12-15 |
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rnaalishapes
|
public |
RNAalishapes is a tool for secondary structure prediction, using shape abstraction. Input is a multiple sequence alignment. Pseudoknots are not considered at all.
|
2024-12-15 |
|
python-edlib
|
public |
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
|
2024-12-15 |
|
exparna
|
public |
No Summary
|
2024-12-15 |
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damasker
|
public |
DAMASKER: Module to determine where repeats are and make soft-masks of said
|
2024-12-15 |
|
generax
|
public |
GeneRax: a parallel tool for species tree-aware maximum likelihood based gene tree inference under gene duplication, transfer, and loss.
|
2024-12-15 |
|
rnaredprint
|
public |
Tree-decomposition based dynamic programming algorithm for multiple target RNA design
|
2024-12-15 |
|
pbbam
|
public |
PacBio BAM C++ library
|
2024-12-15 |
|
locarna
|
public |
Multiple alignment of RNAs
|
2024-12-15 |
|
phylobayes-mpi
|
public |
A Bayesian software for phylogentic reconstrunction using mixture models
|
2024-12-15 |
|
bioconductor-switchbox
|
public |
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm
|
2024-12-15 |
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merquryfk
|
public |
MerquryFK replaces meryl with the FastK k-mer counter suite to considerably speed up analyses.
|
2024-12-15 |
