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bioconda / packages / bioconductor-compass 1.40.0

Combinatorial Polyfunctionality Analysis of Single Cells

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.40.0
  • linux-aarch64 v1.40.0
  • osx-64 v1.40.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-compass
conda install bioconda/label/cf201901::bioconductor-compass
conda install bioconda/label/gcc7::bioconductor-compass

Description

COMPASS is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination.


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