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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Type Size Name Uploaded Downloads Labels
conda 387.2 MB | linux-64/clair3-1.2.0-py310h779eee5_0.tar.bz2  20 days and 2 hours ago 144 main
conda 387.2 MB | linux-64/clair3-1.1.2-py310h779eee5_0.tar.bz2  1 month and 10 days ago 172 main
conda 384.4 MB | linux-64/clair3-1.1.1-py310h779eee5_0.tar.bz2  2 months and 30 days ago 421 main
conda 208.5 MB | linux-64/clair3-1.1.0-py39hd649744_0.tar.bz2  4 months and 12 days ago 268 main
conda 208.5 MB | linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2  5 months and 2 hours ago 336 main
conda 208.5 MB | linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2  8 months and 1 day ago 1033 main
conda 208.4 MB | linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2  1 year and 23 days ago 2020 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2  1 year and 2 months ago 542 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2  1 year and 3 months ago 1084 main
conda 208.4 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2  1 year and 3 months ago 248 main
conda 208.3 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2  1 year and 3 months ago 848 main
conda 208.2 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2  1 year and 4 months ago 334 main
conda 201.6 MB | linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2  1 year and 5 months ago 932 main
conda 201.5 MB | linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2  1 year and 8 months ago 1288 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2  1 year and 10 months ago 1451 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2  1 year and 11 months ago 505 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2  2 years and 1 month ago 344 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2  2 years and 1 month ago 164 main
conda 201.5 MB | linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2  2 years and 2 months ago 1675 main
conda 201.5 MB | linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2  2 years and 2 months ago 1654 main
conda 142.2 MB | linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2  2 years and 3 months ago 1681 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2  2 years and 5 months ago 1819 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2  2 years and 5 months ago 228 main
conda 142.2 MB | linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2  2 years and 10 months ago 2796 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2  2 years and 11 months ago 234 main

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