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bioconda / packages / clair3

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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Filters

Type	Size	Name	Uploaded	Downloads	Labels
conda	208.4 MB	\| linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2	3 months and 24 days ago	1009	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2	5 months and 8 days ago	317	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2	6 months and 12 days ago	776	main
conda	208.4 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2	6 months and 20 days ago	178	main
conda	208.3 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2	6 months and 26 days ago	536	main
conda	208.2 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2	7 months and 12 days ago	263	main
conda	201.6 MB	\| linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2	8 months and 5 days ago	612	main
conda	201.5 MB	\| linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2	11 months and 1 day ago	931	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2	1 year and 1 month ago	1048	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2	1 year and 2 months ago	411	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2	1 year and 4 months ago	268	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2	1 year and 4 months ago	96	main
conda	201.5 MB	\| linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2	1 year and 5 months ago	1327	main
conda	201.5 MB	\| linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2	1 year and 5 months ago	1346	main
conda	142.2 MB	\| linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2	1 year and 6 months ago	1365	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2	1 year and 8 months ago	1499	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2	1 year and 8 months ago	156	main
conda	142.2 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2	2 years and 1 month ago	2543	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2	2 years and 2 months ago	162	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2	2 years and 2 months ago	289	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2	2 years and 2 months ago	134	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2	2 years and 3 months ago	152	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2	2 years and 3 months ago	137	main
conda	145.4 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2	2 years and 4 months ago	2432	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2	2 years and 6 months ago	464	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2	2 years and 7 months ago	338	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2	2 years and 7 months ago	143	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2	2 years and 7 months ago	170	main
conda	145.1 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2	2 years and 7 months ago	183	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2	2 years and 7 months ago	158	main
conda	140.7 MB	\| noarch/clair3-0.1.10-hdfd78af_0.tar.bz2	2 years and 10 months ago	2149	main
conda	140.8 MB	\| noarch/clair3-0.1.9-hdfd78af_0.tar.bz2	2 years and 11 months ago	2213	main
conda	140.8 MB	\| noarch/clair3-0.1.8-hdfd78af_0.tar.bz2	3 years and 9 days ago	2317	main
conda	140.8 MB	\| noarch/clair3-0.1.7-hdfd78af_0.tar.bz2	3 years and 1 month ago	2414	main
conda	140.8 MB	\| noarch/clair3-0.1.6-hdfd78af_0.tar.bz2	3 years and 2 months ago	2538	main
conda	140.8 MB	\| noarch/clair3-0.1.5-hdfd78af_0.tar.bz2	3 years and 4 months ago	2521	main
conda	140.8 MB	\| noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2	3 years and 4 months ago	2402	main
conda	140.8 MB	\| noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2	3 years and 4 months ago	2327	main
conda	140.8 MB	\| noarch/clair3-0.1.4-hdfd78af_0.tar.bz2	3 years and 4 months ago	2361	main

bioconda / packages / clair3 0

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bioconda / packages / clair3

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