Clair3 is a small variant caller for long-reads. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
To install this package, run one of the following:
Summary
Clair3 is a small variant caller for long-reads. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
Last Updated
Apr 27, 2026 at 05:59
License
BSD-3-Clause
Supported Platforms
Unsupported Platforms
GitHub Repository
https://github.com/HKU-BAL/Clair3Documentation
https://github.com/HKU-BAL/Clair3