Clair3 is a small variant caller for long-reads. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
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Summary
Clair3 is a small variant caller for long-reads. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.
Last Updated
Mar 17, 2026 at 19:02
License
BSD-3-Clause
Total Downloads
64.5K
Version Downloads
257
Supported Platforms
Unsupported Platforms
GitHub Repository
https://github.com/HKU-BAL/Clair3Documentation
https://github.com/HKU-BAL/Clair3