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bioconda / packages / clair3

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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Filters

Type	Size	Name	Uploaded	Downloads	Labels
conda	208.5 MB	\| linux-64/clair3-1.1.0-py39hd649744_0.tar.bz2	7 days and 19 hours ago	90	main
conda	208.5 MB	\| linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2	26 days and 5 hours ago	283	main
conda	208.5 MB	\| linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2	3 months and 27 days ago	915	main
conda	208.4 MB	\| linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2	8 months and 18 days ago	1407	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2	10 months and 3 days ago	391	main
conda	208.3 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2	11 months and 6 days ago	1048	main
conda	208.4 MB	\| linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2	11 months and 15 days ago	211	main
conda	208.3 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2	11 months and 21 days ago	809	main
conda	208.2 MB	\| linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2	1 year and 7 days ago	297	main
conda	201.6 MB	\| linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2	1 year and 1 month ago	889	main
conda	201.5 MB	\| linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2	1 year and 3 months ago	1238	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2	1 year and 5 months ago	1400	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2	1 year and 7 months ago	458	main
conda	201.5 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2	1 year and 8 months ago	305	main
conda	201.6 MB	\| linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2	1 year and 9 months ago	127	main
conda	201.5 MB	\| linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2	1 year and 9 months ago	1614	main
conda	201.5 MB	\| linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2	1 year and 10 months ago	1616	main
conda	142.2 MB	\| linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2	1 year and 11 months ago	1641	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2	2 years and 1 month ago	1776	main
conda	142.2 MB	\| linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2	2 years and 1 month ago	191	main
conda	142.2 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2	2 years and 6 months ago	2751	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2	2 years and 7 months ago	194	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2	2 years and 7 months ago	331	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2	2 years and 7 months ago	165	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2	2 years and 7 months ago	186	main
conda	142.3 MB	\| linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2	2 years and 7 months ago	171	main
conda	145.4 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2	2 years and 9 months ago	2710	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2	2 years and 10 months ago	502	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2	2 years and 11 months ago	372	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2	3 years and 1 hour ago	176	main
conda	145.2 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2	3 years and 5 days ago	206	main
conda	145.1 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2	3 years and 10 days ago	219	main
conda	145.3 MB	\| linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2	3 years and 12 days ago	193	main
conda	140.7 MB	\| noarch/clair3-0.1.10-hdfd78af_0.tar.bz2	3 years and 3 months ago	2348	main
conda	140.8 MB	\| noarch/clair3-0.1.9-hdfd78af_0.tar.bz2	3 years and 4 months ago	2483	main
conda	140.8 MB	\| noarch/clair3-0.1.8-hdfd78af_0.tar.bz2	3 years and 5 months ago	2587	main
conda	140.8 MB	\| noarch/clair3-0.1.7-hdfd78af_0.tar.bz2	3 years and 5 months ago	2681	main
conda	140.8 MB	\| noarch/clair3-0.1.6-hdfd78af_0.tar.bz2	3 years and 7 months ago	2806	main
conda	140.8 MB	\| noarch/clair3-0.1.5-hdfd78af_0.tar.bz2	3 years and 8 months ago	2790	main
conda	140.8 MB	\| noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2	3 years and 9 months ago	2669	main
conda	140.8 MB	\| noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2	3 years and 9 months ago	2596	main
conda	140.8 MB	\| noarch/clair3-0.1.4-hdfd78af_0.tar.bz2	3 years and 9 months ago	2632	main

bioconda / packages / clair3 0

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bioconda / packages / clair3

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