Anaconda.org

clair3

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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

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linux-64/clair3-1.2.0-py310h779eee5_0.tar.bz2

conda

1.2.0

linux-64

main

Aug 1, 2025, 08:59 AM

387.22 MB

2.4K

linux-64/clair3-1.1.2-py310h779eee5_0.tar.bz2

conda

1.1.2

linux-64

main

Jul 10, 2025, 05:42 PM

387.24 MB

339

linux-64/clair3-1.1.1-py310h779eee5_0.tar.bz2

conda

1.1.1

linux-64

main

May 21, 2025, 12:23 PM

384.36 MB

654

linux-64/clair3-1.1.0-py39hd649744_0.tar.bz2

conda

1.1.0

linux-64

main

Apr 8, 2025, 07:20 PM

208.49 MB

405

linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2

conda

1.0.11

linux-64

main

Mar 21, 2025, 09:02 AM

208.48 MB

486

linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2

conda

1.0.10

linux-64

main

Dec 19, 2024, 03:49 PM

208.46 MB

1.2K

linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2

conda

1.0.10

linux-64

main

Jul 28, 2024, 03:10 PM

208.43 MB

2.6K

linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2

conda

1.0.8

linux-64

main

Jun 12, 2024, 09:30 PM

208.32 MB

630

linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2

conda

1.0.8

linux-64

main

May 9, 2024, 05:21 PM

208.31 MB

1.2K

linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2

conda

1.0.8

linux-64

main

May 1, 2024, 06:54 AM

208.37 MB

281

linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2

conda

1.0.7

linux-64

main

Apr 26, 2024, 12:36 AM

208.33 MB

987

linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2

conda

1.0.7

linux-64

main

Apr 8, 2024, 11:53 PM

208.22 MB

368

linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2

conda

1.0.6

linux-64

main

Mar 16, 2024, 06:54 AM

201.55 MB

1.1K

linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2

conda

1.0.5

linux-64

main

Dec 20, 2023, 03:17 PM

201.55 MB

1.4K

linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2

conda

1.0.4

linux-64

main

Oct 21, 2023, 01:38 AM

201.49 MB

1.7K

linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2

conda

1.0.4

linux-64

main

Aug 23, 2023, 12:40 PM

201.55 MB

573

linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2

conda

1.0.4

linux-64

main

Jul 20, 2023, 07:55 AM

201.51 MB

384

linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2

conda

1.0.4

linux-64

main

Jul 15, 2023, 07:48 PM

201.56 MB

200

linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2

conda

1.0.3

linux-64

main

Jun 20, 2023, 01:21 PM

201.47 MB

1.8K

linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2

conda

1.0.2

linux-64

main

May 23, 2023, 04:18 PM

201.53 MB

1.8K

linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2

conda

1.0.1

linux-64

main

Apr 26, 2023, 01:56 PM

142.17 MB

1.8K

linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2

conda

1.0.0

linux-64

main

Mar 15, 2023, 03:52 AM

142.23 MB

2.0K

linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2

conda

1.0.0

linux-64

main

Mar 7, 2023, 01:09 AM

142.17 MB

267

linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2

conda

0.1.12

linux-64

main

Sep 27, 2022, 07:09 AM

142.18 MB

2.8K

linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2

conda

0.1.12

linux-64

main

Sep 15, 2022, 07:45 AM

142.32 MB

266

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