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Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

Type Size Name Uploaded Downloads Labels
conda 145.4 MB | linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2  2 years and 8 months ago 2677 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2  2 years and 10 months ago 498 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2  2 years and 11 months ago 368 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2  2 years and 11 months ago 172 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2  2 years and 11 months ago 202 main
conda 145.1 MB | linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2  2 years and 11 months ago 215 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2  2 years and 11 months ago 189 main
conda 140.7 MB | noarch/clair3-0.1.10-hdfd78af_0.tar.bz2  3 years and 2 months ago 2323 main
conda 140.8 MB | noarch/clair3-0.1.9-hdfd78af_0.tar.bz2  3 years and 3 months ago 2442 main
conda 140.8 MB | noarch/clair3-0.1.8-hdfd78af_0.tar.bz2  3 years and 4 months ago 2546 main
conda 140.8 MB | noarch/clair3-0.1.7-hdfd78af_0.tar.bz2  3 years and 5 months ago 2640 main
conda 140.8 MB | noarch/clair3-0.1.6-hdfd78af_0.tar.bz2  3 years and 6 months ago 2765 main
conda 140.8 MB | noarch/clair3-0.1.5-hdfd78af_0.tar.bz2  3 years and 8 months ago 2749 main
conda 140.8 MB | noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2  3 years and 8 months ago 2628 main
conda 140.8 MB | noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2  3 years and 8 months ago 2555 main
conda 140.8 MB | noarch/clair3-0.1.4-hdfd78af_0.tar.bz2  3 years and 9 months ago 2591 main

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