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bioconda / packages

Package Name Access Summary Updated
ensembl-py public Ensembl Python base library 2025-07-28
mupbwt public A light pbwt-based index 2025-07-28
sequana_pipetools public A set of tools to help building or using Sequana pipelines 2025-07-28
usher public Ultrafast Sample Placement on Existing Trees (UShER). 2025-07-28
antismash public antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. 2025-07-28
diamond public Accelerated BLAST compatible local sequence aligner. 2025-07-28
hmftools-pave public PAVE annotates SNV/MNV/INDEL calls with consequence on corresponding genes, transcripts, and proteins. 2025-07-28
hmftools-cobalt public Calculate read-depth counts and GC ratios to use in PURPLE. 2025-07-28
hmftools-isofox public Isofox is a tool for counting fragment support for identifying and counting gene and transcript features using genome aligned RNASeq data in tumor samples. 2025-07-28
readfq public A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version 2025-07-28
kmergenie public KmerGenie estimates the best k-mer length for genome de novo assembly 2025-07-28
ribotin public Ribosomal DNA assembly tool. 2025-07-28
maker public MAKER is a portable and easily configurable genome annotation pipeline. 2025-07-28
mp-est public Maximum Pseudo-likelihood Estimation of Species Trees 2025-07-28
winnowmap public Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. 2025-07-28
graphaligner public Sequence to graph aligner for long reads 2025-07-27
plass public Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs 2025-07-27
spacepharer public SpacePHARER: Sensitive identification of phages from CRISPR spacers in prokaryotic hosts 2025-07-27
alphafill public Transplant missing compounds to the AlphaFold models 2025-07-27
mrtrix3 public A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density 2025-07-27
fibertools-rs public Mitchell Vollger's rust tools for fiberseq data. 2025-07-27
metabolabpy public Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis. 2025-07-27
hmftools-orange public ORANGE summarizes the key outputs from all algorithms in the Hartwig suite. 2025-07-27
straglr public Short-tandem repeat genotyping using long reads 2025-07-27
mmseqs2 public MMseqs2: ultra fast and sensitive sequence search and clustering suite 2025-07-27

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