bioconda / packages / bioconductor-scbfa 1.2.0

A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq

Installers

conda install

  • noarch  v1.2.0
To install this package with conda run:
conda install -c bioconda bioconductor-scbfa

Description

This package is designed to model gene detection pattern of scRNA-seq through a binary factor analysis model. This model allows user to pass into a cell level covariate matrix X and gene level covariate matrix Q to account for nuisance variance(e.g batch effect), and it will output a low dimensional embedding matrix for downstream analysis.

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