bioconda / packages / bioconductor-annotatr 1.18.0

Annotation of Genomic Regions to Genomic Annotations

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.18.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-annotatr
conda install -c bioconda/label/gcc7 bioconductor-annotatr

Description

Given a set of genomic sites/regions (e.g. ChIP-seq peaks, CpGs, differentially methylated CpGs or regions, SNPs, etc.) it is often of interest to investigate the intersecting genomic annotations. Such annotations include those relating to gene models (promoters, 5'UTRs, exons, introns, and 3'UTRs), CpGs (CpG islands, CpG shores, CpG shelves), or regulatory sequences such as enhancers. The annotatr package provides an easy way to summarize and visualize the intersection of genomic sites/regions with genomic annotations.


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