| Package Name | Access | Summary | Updated |
|---|---|---|---|
| chromsize | public | just get your chrom sizes | 2025-09-22 |
| lrge | public | Genome size estimation from long read overlaps | 2025-09-22 |
| bigtools | public | Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files. | 2025-09-21 |
| survivor | public | Toolset for SV simulation, comparison and filtering | 2025-09-21 |
| decifer | public | DeCiFer simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell fractions (DCF) | 2025-09-21 |
| expansionhunter | public | A tool for estimating repeat sizes | 2025-09-21 |
| vt | public | A tool set for short variant discovery in genetic sequence data | 2025-09-21 |
| stringdecomposer | public | A tool for decomposing of strings into a set of given monomers | 2025-09-21 |
| quatradis | public | A set of tools to analyse the output from TraDIS analyses | 2025-09-21 |
| albatradis | public | Comparative TraDIS analysis. | 2025-09-21 |
| gangstr | public | GangSTR is a tool for genome-wide profiling tandem repeats from short reads. | 2025-09-21 |
| espresso | public | ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data | 2025-09-21 |
| snakemake-executor-plugin-cannon | public | A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University. | 2025-09-21 |
| sigprofilerassignment | public | SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations | 2025-09-20 |
| concoct | public | Clustering cONtigs with COverage and ComposiTion | 2025-09-20 |
| sigprofilerextractor | public | Extracts mutational signatures from mutational catalogues. | 2025-09-20 |
| comparem2 | public | CompareM2 genomes-to-report pipeline | 2025-09-20 |
| rust-gtars | public | Performance-critical tools to manipulate, analyze, and process genomic interval data. | 2025-09-20 |
| snakemake-executor-plugin-slurm | public | A Snakemake executor plugin for submitting jobs to a SLURM cluster. | 2025-09-20 |
| cawlign | public | A tool for aligning consensus sequences to reference genomes. | 2025-09-20 |
| art_modern | public | Modernized ART simulator of diverse Next-Generation Sequencing reads | 2025-09-20 |
| censtats | public | Centromere statistics toolkit. | 2025-09-20 |
| ibridges | public | Package for accessing data and metadata on iRods servers. | 2025-09-20 |
| seqchromloader | public | Sequence and chromatin dataloader for deep learning | 2025-09-19 |
| genbank | public | Code to work with Genbank files | 2025-09-19 |
