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bioconda / packages

Package Name Access Summary Updated
vembrane public Filter VCF/BCF files with Python expressions. 2025-09-27
cryptogenotyper public This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers. 2025-09-27
perl-extutils-parsexs public Converts Perl XS code into C code. 2025-09-27
spades public SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. 2025-09-27
dysgu public A collection of tools for calling structural variants using short or long reads. 2025-09-27
randfold public No Summary 2025-09-26
oxbow public Read genomic file formats into data frames and more. 2025-09-26
prinseq-plus-plus public PRINSEQ++ - Multi-threaded C++ sequence cleaning 2025-09-26
maxbin2 public MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. 2025-09-26
corset public Software for clustering de novo assembled transcripts and counting overlapping reads. 2025-09-26
psiclass public Simultaneous multi-sample transcript assembler for RNA-seq data 2025-09-26
ephemeris public Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows. 2025-09-26
spaln public Map and align a set of cDNA/EST or protein sequences onto a genome. 2025-09-26
parnas public Representative taxon sampling from phylogenetic trees 2025-09-26
beacon2-ri-tools public Package of tools designed to simplify the population of a Beacon v2 mongoDB database 2025-09-26
lca public LCA - Lowest Common Ancestor calculation tool 2025-09-26
kma public KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. 2025-09-26
lodei public Analyze differentially edited A-to-I regions in two sets of RNA-seq samples. 2025-09-26
ensembl-vep public Ensembl Variant Effect Predictor 2025-09-26
clustalo public Latest version of Clustal: a multiple sequence alignment program for DNA or proteins 2025-09-26
emboss public The European Molecular Biology Open Software Suite 2025-09-26
consel public CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection 2025-09-26
pybedlite public Lightweight python classes for interfacing with bed intervals. 2025-09-26
pybwa public Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa. 2025-09-26
pm4ngs public PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis. 2025-09-26

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