| Package Name | Access | Summary | Updated |
|---|---|---|---|
| vt | public | A tool set for short variant discovery in genetic sequence data | 2025-09-21 |
| stringdecomposer | public | A tool for decomposing of strings into a set of given monomers | 2025-09-21 |
| quatradis | public | A set of tools to analyse the output from TraDIS analyses | 2025-09-21 |
| albatradis | public | Comparative TraDIS analysis. | 2025-09-21 |
| gangstr | public | GangSTR is a tool for genome-wide profiling tandem repeats from short reads. | 2025-09-21 |
| espresso | public | ESPRESSO (Error Statistics PRomoted Evaluator of Splice Site Options) processes long read RNA-seq data | 2025-09-21 |
| snakemake-executor-plugin-cannon | public | A Snakemake executor plugin for submitting jobs to the Cannon cluster at Harvard University. | 2025-09-21 |
| sigprofilerassignment | public | SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations | 2025-09-20 |
| concoct | public | Clustering cONtigs with COverage and ComposiTion | 2025-09-20 |
| sigprofilerextractor | public | Extracts mutational signatures from mutational catalogues. | 2025-09-20 |
| comparem2 | public | CompareM2 genomes-to-report pipeline | 2025-09-20 |
| rust-gtars | public | Performance-critical tools to manipulate, analyze, and process genomic interval data. | 2025-09-20 |
| snakemake-executor-plugin-slurm | public | A Snakemake executor plugin for submitting jobs to a SLURM cluster. | 2025-09-20 |
| cawlign | public | A tool for aligning consensus sequences to reference genomes. | 2025-09-20 |
| censtats | public | Centromere statistics toolkit. | 2025-09-20 |
| ibridges | public | Package for accessing data and metadata on iRods servers. | 2025-09-20 |
| seqchromloader | public | Sequence and chromatin dataloader for deep learning | 2025-09-19 |
| genbank | public | Code to work with Genbank files | 2025-09-19 |
| chopper | public | A rust command line for filtering and trimming long reads. | 2025-09-19 |
| samsift | public | Advanced filtering and tagging of SAM/BAM alignments using Python expressions. | 2025-09-19 |
| phynder | public | Efficient likelihood calculations to place samples into a phylogenetic tree. | 2025-09-19 |
| ngs-disambiguate | public | Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem | 2025-09-19 |
| snp-dists | public | Convert a FASTA alignment to SNP distance matrix | 2025-09-19 |
| smalt | public | SMALT aligns DNA sequencing reads with a reference genome. | 2025-09-18 |
| edena | public | No Summary | 2025-09-18 |
