SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v3.14.0
  • osx-64  v3.14.0
To install this package with conda run one of the following:
conda install -c bioconda spades
conda install -c bioconda/label/cf201901 spades

Description

SPAdes (St. Petersburg genome assembler) is a genome assembly algorithm which was designed for single cell and multi-cells bacterial data sets. However, it might not be suitable for large genomes projects.

SPAdes works with Ion Torrent, PacBio, Oxford Nanopore, and Illumina paired-end, mate-pairs and single reads

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