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Map and align a set of cDNA/EST or protein sequences onto a genome

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v3.0.6
  • osx-64 v3.0.4
  • linux-aarch64 v3.0.6

conda install

To install this package run one of the following:
conda install bioconda::spaln
conda install bioconda/label/cf201901::spaln

Description

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. Spaln also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.


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