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bioconductor-netzoor

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Unified methods for the inference and analysis of gene regulatory networks

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-netzoor

Usage Tracking

1.10.0
1.6.0
1.4.0
1.2.0
4 / 8 versions selected
Total downloads: 0

Description

netZooR unifies the implementations of several Network Zoo methods (netzoo, netzoo.github.io) into a single package by creating interfaces between network inference and network analysis methods. Currently, the package has 3 methods for network inference including PANDA and its optimized implementation OTTER (network reconstruction using mutliple lines of biological evidence), LIONESS (single-sample network inference), and EGRET (genotype-specific networks). Network analysis methods include CONDOR (community detection), ALPACA (differential community detection), CRANE (significance estimation of differential modules), MONSTER (estimation of network transition states). In addition, YARN allows to process gene expresssion data for tissue-specific analyses and SAMBAR infers missing mutation data based on pathway information.

About

Summary

Unified methods for the inference and analysis of gene regulatory networks

Information Last Updated

Apr 22, 2025 at 15:29

License

GPL-3

Total Downloads

4.6K

Platforms

noarch Version: 1.10.0