bioconda / packages / bioconductor-derfinder 1.22.0

Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.0
  • osx-64  v1.14.0
  • noarch  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-derfinder
conda install -c bioconda/label/gcc7 bioconductor-derfinder
conda install -c bioconda/label/cf201901 bioconductor-derfinder

Description

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

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