bioconda / packages / bioconductor-recount 1.20.0

Explore and download data from the recount project

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.3
  • osx-64  v1.6.3
  • noarch  v1.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-recount
conda install -c bioconda/label/gcc7 bioconductor-recount
conda install -c bioconda/label/cf201901 bioconductor-recount

Description

Explore and download data from the recount project available at https://jhubiostatistics.shinyapps.io/recount/. Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using http://bioconductor.org/packages/derfinder you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.


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