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perl-scalar-util-numeric
|
public |
numeric tests for perl scalars
|
2024-11-05 |
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perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2024-11-05 |
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perl-url-encode
|
public |
Encoding and decoding of application/x-www-form-urlencoded encoding.
|
2024-11-05 |
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perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2024-11-05 |
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perl-padwalker
|
public |
play with other peoples' lexical variables
|
2024-11-05 |
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perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2024-11-05 |
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perl-json-create
|
public |
fast, minimal, UTF-8-only serialization of data to JSON
|
2024-11-05 |
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perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-11-05 |
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perl-set-object
|
public |
Unordered collections (sets) of Perl Objects
|
2024-11-05 |
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perl-config-any
|
public |
Load configuration from different file formats, transparently
|
2024-11-05 |
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fc
|
public |
Accurate Assembly of Full-length Consensus for Viral Quasispecies.
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2024-11-05 |
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bubblegun
|
public |
BubbleGun is a tool for detecting bubbles and superbubbles in GFA graphs, and reports them and their nested structures.
|
2024-11-05 |
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tinscan
|
public |
Find alignment signatures characteristic of transposon insertion sites.
|
2024-11-05 |
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pybigtools
|
public |
pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O
|
2024-11-05 |
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rotate
|
public |
Simple program to rotate a circular sequence to start at a given position or string.
|
2024-11-05 |
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mutyper
|
public |
A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs.
|
2024-11-05 |
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perl-unicode-normalize
|
public |
Unicode Normalization Forms
|
2024-11-05 |
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perl-unicode-map
|
public |
Map charsets from and to UTF-16 unicode
|
2024-11-05 |
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perl-bloom-faster
|
public |
Perl extension for the c library libbloom.
|
2024-11-05 |
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perl-json-parse
|
public |
Read JSON into a Perl variable
|
2024-11-05 |
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perl-crypt-openssl-random
|
public |
No Summary
|
2024-11-05 |
|
perl-ipc-sharelite
|
public |
Lightweight interface to shared memory
|
2024-11-05 |
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perl-heap-simple-xs
|
public |
No Summary
|
2024-11-05 |
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perl-math-cdf
|
public |
Generate probabilities and quantiles from several statistical probability functions
|
2024-11-05 |
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perl-crypt-openssl-rsa
|
public |
RSA encoding and decoding, using the openSSL libraries
|
2024-11-05 |
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perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-11-05 |
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perl-filesys-df
|
public |
Perl extension for filesystem disk space information.
|
2024-11-05 |
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decom
|
public |
decOM: Similarity-based microbial source tracking for contamination assessment of ancient oral samples using k-mer-based methods
|
2024-11-05 |
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perl-unicode-utf8
|
public |
Encoding and decoding of UTF-8 encoding form
|
2024-11-05 |
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perl-math-random
|
public |
Random Number Generators
|
2024-11-05 |
|
metabolabpy
|
public |
Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis.
|
2024-11-04 |
|
cmaple
|
public |
MAximum Parsimonious Likelihood Estimation in C/C++.
|
2024-11-04 |
|
smudgeplot
|
public |
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
|
2024-11-04 |
|
gb-io
|
public |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
|
2024-11-04 |
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pyopal
|
public |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
|
2024-11-04 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-11-04 |
|
tiberius
|
public |
Tiberius is a programme for quantifying and analysing genetic sequence data.
|
2024-11-04 |
|
mimeo
|
public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
|
2024-11-04 |
|
stranger
|
public |
Annotate VCF files with str variants
|
2024-11-04 |
|
buscolite
|
public |
buscolite: busco analysis for gene predictions
|
2024-11-04 |
|
nf-test
|
public |
nf-test is a simple test framework for Nextflow pipelines.
|
2024-11-04 |
|
gfftk
|
public |
GFFtk: genome annotation GFF3 tool kit
|
2024-11-04 |
|
cramino
|
public |
A tool for very fast quality assessment of long read cram/bam files.
|
2024-11-04 |
|
eagle2
|
public |
The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel.
|
2024-11-04 |
|
ms-entropy
|
public |
This package provides a Python implementation of calculating spectral entropy, entropy similarity, and Flash entropy search for mass spectrometry data.
|
2024-11-04 |
|
pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2024-11-04 |
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hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2024-11-04 |
|
bigtools
|
public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
|
2024-11-04 |
|
jarvis3
|
public |
Improved encoder for genomic sequences.
|
2024-11-04 |
|
bioutils
|
public |
miscellaneous simple bioinformatics utilities and lookup tables
|
2024-11-04 |
