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bioconductor-holofoodr
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public |
R interface to EBI HoloFood resource
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2025-03-25 |
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kyber
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public |
Tool to create a length-accuracy heatmap from a cram or bam file
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2025-03-25 |
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bioconductor-rblast
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public |
R Interface for the Basic Local Alignment Search Tool
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2025-03-25 |
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bioconductor-iseefier
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public |
Streamlining the creation of initial states for starting an iSEE instance
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2025-03-25 |
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bioconductor-damsel
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public |
Damsel: an end to end analysis of DamID
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2025-03-25 |
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digest
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public |
Fast, multi-use k-mer sub-sampling library
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2025-03-25 |
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taranys
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public |
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
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2025-03-25 |
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bioconductor-adapt
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public |
Analysis of Microbiome Differential Abundance by Pooling Tobit Models
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2025-03-25 |
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scarap
|
public |
A toolkit for prokaryotic comparative genomics
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2025-03-25 |
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plasann
|
public |
A tool for plasmid annotation and visualization
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2025-03-25 |
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samstrip
|
public |
Strip SAM files of data not needed for alignment computations.
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2025-03-25 |
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mumemto
|
public |
Finding maximal unique matches across pangenomes
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2025-03-25 |
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pacini_typing
|
public |
YAML-based bacterial genotyping application
|
2025-03-25 |
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hicberg
|
public |
Statistical profiling based tool for contact data (Hi-C, ChIA-PET, Capture-C, etc.) and genomics data reconstruction
|
2025-03-25 |
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bioconductor-epiregulon
|
public |
Gene regulatory network inference from single cell epigenomic data
|
2025-03-25 |
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bioconductor-cleanuprnaseq
|
public |
Detect and Correct Genomic DNA Contamination in RNA-seq Data
|
2025-03-25 |
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bioconductor-tidyomics
|
public |
Easily install and load the tidyomics ecosystem
|
2025-03-25 |
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bioconductor-degcre
|
public |
Probabilistic association of DEGs to CREs from differential data
|
2025-03-25 |
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bioconductor-transmogr
|
public |
Modify a set of reference sequences using a set of variants
|
2025-03-25 |
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bioconductor-crisprshiny
|
public |
Exploring curated CRISPR gRNAs via Shiny
|
2025-03-25 |
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bioconductor-cytomds
|
public |
Low Dimensions projection of cytometry samples
|
2025-03-25 |
|
bioconductor-tmsig
|
public |
Tools for Molecular Signatures
|
2025-03-25 |
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nanopack
|
public |
A meta package for several long read processing and analysis tools.
|
2025-03-25 |
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bioconductor-plsdabatch
|
public |
PLSDA-batch
|
2025-03-25 |
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bioconductor-treeclimbr
|
public |
An algorithm to find optimal signal levels in a tree
|
2025-03-25 |
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bioconductor-tidycoverage
|
public |
Extract and aggregate genomic coverage over features of interest
|
2025-03-25 |
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bioconductor-hicaggr
|
public |
Set of 3D genomic interaction analysis tools
|
2025-03-25 |
|
bioconductor-saser
|
public |
Scalable Aberrant Splicing and Expression Retrieval
|
2025-03-25 |
|
bioconductor-duplexdiscoverer
|
public |
Analysis of the data from RNA duplex probing experiments
|
2025-03-25 |
|
bioconductor-gatom
|
public |
Finding an Active Metabolic Module in Atom Transition Network
|
2025-03-25 |
|
bioconductor-iseetree
|
public |
Interactive visualisation for microbiome data
|
2025-03-25 |
|
bioconductor-mgnifyr
|
public |
R interface to EBI MGnify metagenomics resource
|
2025-03-25 |
|
bioconductor-dar
|
public |
Differential Abundance Analysis by Consensus
|
2025-03-25 |
|
bioconductor-zitools
|
public |
Analysis of zero-inflated count data
|
2025-03-25 |
|
bioconductor-multirnaflow
|
public |
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions
|
2025-03-25 |
|
bioconductor-hybridexpress
|
public |
Comparative analysis of RNA-seq data for hybrids and their progenitors
|
2025-03-25 |
|
bioconductor-metmashr
|
public |
Metabolite Mashing with R
|
2025-03-25 |
|
bioconductor-micsqtl
|
public |
MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)
|
2025-03-25 |
|
bioconductor-clusterfoldsimilarity
|
public |
Calculate similarity of clusters from different single cell samples using foldchanges
|
2025-03-25 |
|
bioconductor-singlecellalleleexperiment
|
public |
S4 Class for Single Cell Data with Allele and Functional Levels for Immune Genes
|
2025-03-25 |
|
bioconductor-multistateqtl
|
public |
Toolkit for the analysis of multi-state QTL data
|
2025-03-25 |
|
bioconductor-txdbmaker
|
public |
Tools for making TxDb objects from genomic annotations
|
2025-03-25 |
|
pdb2fasta
|
public |
Convert PDB structures to FASTA sequences.
|
2025-03-25 |
|
suchtree
|
public |
A python library for doing fast, thread-safe computations on phylogenetic trees
|
2025-03-25 |
|
bioconductor-cytomethic
|
public |
DNA methylation-based classification and regression
|
2025-03-25 |
|
bioconductor-spillr
|
public |
Spillover Compensation in Mass Cytometry Data
|
2025-03-25 |
|
bioconductor-mpac
|
public |
Multi-omic Pathway Analysis of Cancer
|
2025-03-25 |
|
bioconductor-lute
|
public |
Framework for cell size scale factor normalized bulk transcriptomics deconvolution experiments
|
2025-03-25 |
|
bioconductor-spanorm
|
public |
Spatially-aware normalisation for spatial transcriptomics data
|
2025-03-25 |
|
lodei
|
public |
Analyze differentially edited A-to-I regions in two sets of RNA-seq samples.
|
2025-03-25 |
