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bioconductor-lute

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Framework for cell size scale factor normalized bulk transcriptomics deconvolution experiments

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-lute

Usage Tracking

1.2.0
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Downloads (Last 6 months): 0

Description

Provides a framework for adjustment on cell type size when performing bulk transcripomics deconvolution. The main framework function provides a means of reference normalization using cell size scale factors. It allows for marker selection and deconvolution using non-negative least squares (NNLS) by default. The framework is extensible for other marker selection and deconvolution algorithms, and users may reuse the generics, methods, and classes for these when developing new algorithms.

About

Summary

Framework for cell size scale factor normalized bulk transcriptomics deconvolution experiments

Last Updated

Dec 23, 2024 at 12:20

License

Artistic-2.0

Total Downloads

390

Supported Platforms

noarch