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autobigs-engine
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public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
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2025-03-25 |
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nafcodec
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public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
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2025-03-25 |
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kbo-cli
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public |
Command-line interface for the kbo local aligner
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2025-03-25 |
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grepq
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public |
Quickly filter FASTQ files.
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2025-03-25 |
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eastr
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public |
Tool for emending alignments of spuriously spliced transcript reads.
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2025-03-25 |
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linkedsv
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public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
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2025-03-25 |
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ourotools
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public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
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2025-03-25 |
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biobb_morph
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public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
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2025-03-25 |
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qimba
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public |
Toolkit for metabarcoding analyses
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2025-03-25 |
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octopusv
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public |
OctopusV: Advanced Structural Variant Analysis Toolkit
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2025-03-25 |
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r-ukbrapr
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public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
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2025-03-25 |
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geomloss
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public |
Geometric loss functions between point clouds, images and volumes.
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2025-03-25 |
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memopair
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public |
A package for identifying methylated motif pairs
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2025-03-25 |
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mrtrix3
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public |
A set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
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2025-03-25 |
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snakebids
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public |
BIDS integration into snakemake workflows
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2025-03-25 |
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seg-suite
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public |
The seg suite provides tools for manipulating segments, alignments, and annotations of sequences.
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2025-03-25 |
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rust-gtars
|
public |
Performance-critical tools to manipulate, analyze, and process genomic interval data.
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2025-03-25 |
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msoma
|
public |
mSOMA: Somatic Mutation Detection using a betabinomial null model
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2025-03-25 |
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fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
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2025-03-25 |
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glean-gene
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public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
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2025-03-25 |
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r-scroshi
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public |
scROSHI: robust supervised hierarchical identification of single cells
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2025-03-25 |
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isorefiner
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public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
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2025-03-25 |
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excludonfinder
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public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data.
|
2025-03-25 |
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primalbedtools
|
public |
A collection of tools for working with primer.bed files
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2025-03-25 |
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pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
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2025-03-25 |
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caspeak
|
public |
A pipeline for finding non-reference mobile element insertions
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2025-03-25 |
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unifeb
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public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
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2025-03-25 |
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plothic
|
public |
Plot Whole genome Hi-C contact matrix heatmap.
|
2025-03-25 |
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bioconductor-mosdef
|
public |
MOSt frequently used and useful Differential Expression Functions
|
2025-03-25 |
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bioconductor-epiregulon.extra
|
public |
Companion package to epiregulon with additional plotting, differential and graph functions
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2025-03-25 |
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bioconductor-scdiagnostics
|
public |
Cell type annotation diagnostics
|
2025-03-25 |
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bioconductor-enrichdo
|
public |
a Global Weighted Model for Disease Ontology Enrichment Analysis
|
2025-03-25 |
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bioconductor-camutqc
|
public |
An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations
|
2025-03-25 |
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bioconductor-broadseq
|
public |
broadSeq : for streamlined exploration of RNA-seq data
|
2025-03-25 |
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bioconductor-tidyspatialexperiment
|
public |
SpatialExperiment with tidy principles
|
2025-03-25 |
|
bioconductor-prone
|
public |
The PROteomics Normalization Evaluator
|
2025-03-25 |
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bioconductor-msbackendmetabolights
|
public |
Retrieve Mass Spectrometry Data from MetaboLights
|
2025-03-25 |
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bioconductor-omicsmlrepor
|
public |
Search harmonized metadata created under the OmicsMLRepo project
|
2025-03-25 |
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bioconductor-holofoodr
|
public |
R interface to EBI HoloFood resource
|
2025-03-25 |
|
kyber
|
public |
Tool to create a length-accuracy heatmap from a cram or bam file
|
2025-03-25 |
|
bioconductor-rblast
|
public |
R Interface for the Basic Local Alignment Search Tool
|
2025-03-25 |
|
bioconductor-iseefier
|
public |
Streamlining the creation of initial states for starting an iSEE instance
|
2025-03-25 |
|
bioconductor-damsel
|
public |
Damsel: an end to end analysis of DamID
|
2025-03-25 |
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digest
|
public |
Fast, multi-use k-mer sub-sampling library
|
2025-03-25 |
|
taranys
|
public |
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
|
2025-03-25 |
|
bioconductor-adapt
|
public |
Analysis of Microbiome Differential Abundance by Pooling Tobit Models
|
2025-03-25 |
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scarap
|
public |
A toolkit for prokaryotic comparative genomics
|
2025-03-25 |
|
plasann
|
public |
A tool for plasmid annotation and visualization
|
2025-03-25 |
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samstrip
|
public |
Strip SAM files of data not needed for alignment computations.
|
2025-03-25 |
|
mumemto
|
public |
Finding maximal unique matches across pangenomes
|
2025-03-25 |
