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bioconductor-spanorm

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Spatially-aware normalisation for spatial transcriptomics data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spanorm

Usage Tracking

1.0.0
1 / 8 versions selected
Total downloads: 0

Description

This package implements the spatially aware library size normalisation algorithm, SpaNorm. SpaNorm normalises out library size effects while retaining biology through the modelling of smooth functions for each effect. Normalisation is performed in a gene- and cell-/spot- specific manner, yielding library size adjusted data.

About

Summary

Spatially-aware normalisation for spatial transcriptomics data

Information Last Updated

Apr 22, 2025 at 15:29

License

GPL (>= 3)

Total Downloads

318

Platforms

noarch Version: 1.0.0