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bioconductor-scpipe
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public |
Pipeline for single cell multi-omic data pre-processing
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2025-03-25 |
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bioconductor-snpchip
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public |
Visualizations for copy number alterations
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2025-03-25 |
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bioconductor-lumi
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public |
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
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2025-03-25 |
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bioconductor-altcdfenvs
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public |
alternative CDF environments (aka probeset mappings)
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2025-03-25 |
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bioconductor-derfinder
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public |
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
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2025-03-25 |
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bioconductor-chimera
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public |
A package for secondary analysis of fusion products
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2025-03-25 |
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bioconductor-hypergraph
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public |
A package providing hypergraph data structures
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2025-03-25 |
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bioconductor-genbankr
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public |
Parsing GenBank files into semantically useful objects
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2025-03-25 |
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bioconductor-genomicfiles
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public |
Distributed computing by file or by range
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2025-03-25 |
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r-vcfr
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public |
Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.
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2025-03-25 |
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bioconductor-homo.sapiens
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public |
Contains the Homo.sapiens object to access data from several related annotation packages.
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2025-03-25 |
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bioconductor-lmgene
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public |
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
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2025-03-25 |
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bioconductor-cytolib
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public |
C++ infrastructure for representing and interacting with the gated cytometry data
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2025-03-25 |
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bioconductor-imagehts
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public |
Analysis of high-throughput microscopy-based screens
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2025-03-25 |
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bioconductor-ideoviz
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public |
Plots data (continuous/discrete) along chromosomal ideogram
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2025-03-25 |
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bioconductor-idiogram
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public |
idiogram
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2025-03-25 |
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bioconductor-hiannotator
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public |
Functions for annotating GRanges objects
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2025-03-25 |
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bioconductor-bladderbatch
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public |
Bladder gene expression data illustrating batch effects
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2025-03-25 |
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bioconductor-flowpeaks
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public |
An R package for flow data clustering
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2025-03-25 |
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bioconductor-flowmap
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public |
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
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2025-03-25 |
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bioconductor-flowclean
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public |
flowClean
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2025-03-25 |
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bioconductor-frma
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public |
Frozen RMA and Barcode
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2025-03-25 |
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bioconductor-frmatools
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public |
Frozen RMA Tools
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2025-03-25 |
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bioconductor-fccac
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public |
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
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2025-03-25 |
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bioconductor-rprotobuflib
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public |
C++ headers and static libraries of Protocol buffers
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2025-03-25 |
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bioconductor-genemeta
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public |
MetaAnalysis for High Throughput Experiments
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2025-03-25 |
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bioconductor-beachmat
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public |
Compiling Bioconductor to Handle Each Matrix Type
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2025-03-25 |
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bioconductor-hdf5array
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public |
HDF5 datasets as array-like objects in R
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2025-03-25 |
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bioconductor-flowrepositoryr
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public |
FlowRepository R Interface
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2025-03-25 |
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bioconductor-gcspikelite
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public |
Spike-in data for GC/MS data and methods within flagme
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2025-03-25 |
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bioconductor-genvisr
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public |
Genomic Visualizations in R
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2025-03-25 |
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bioconductor-fishalyser
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public |
FISHalyseR a package for automated FISH quantification
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2025-03-25 |
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bioconductor-blima
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public |
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level
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2025-03-25 |
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bioconductor-bitseq
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public |
Transcript expression inference and differential expression analysis for RNA-seq data
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2025-03-25 |
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bioconductor-birte
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public |
Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. biRte uses regulatory networks of TFs, miRNAs and possibly other factors, together with mRNA, miRNA and other available expression data to predict the relative influence of a regulator on the expression of its target genes. Inference is done in a Bayesian modeling framework using Markov-Chain-Monte-Carlo. A special feature is the possibility for follow-up network reverse engineering between active regulators.
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2025-03-25 |
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bioconductor-birta
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public |
Bayesian Inference of Regulation of Transcriptional Activity
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2025-03-25 |
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bioconductor-biodist
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public |
Different distance measures
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2025-03-25 |
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bioconductor-beadarray
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public |
Quality assessment and low-level analysis for Illumina BeadArray data
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2025-03-25 |
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bioconductor-beaddatapackr
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public |
Compression of Illumina BeadArray data
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2025-03-25 |
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bioconductor-badregionfinder
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public |
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
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2025-03-25 |
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bioconductor-bac
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public |
Bayesian Analysis of Chip-chip experiment
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2025-03-25 |
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bioconductor-agilp
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public |
Agilent expression array processing package
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2025-03-25 |
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bioconductor-affyrnadegradation
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public |
Analyze and correct probe positional bias in microarray data due to RNA degradation
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2025-03-25 |
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bioconductor-affyilm
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public |
Linear Model of background subtraction and the Langmuir isotherm
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2025-03-25 |
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bioconductor-genomicinteractions
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public |
Utilities for handling genomic interaction data
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2025-03-25 |
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bioconductor-affycontam
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public |
structured corruption of affymetrix cel file data
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2025-03-25 |
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bioconductor-affycompatible
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public |
Affymetrix GeneChip software compatibility
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2025-03-25 |
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bioconductor-genominator
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public |
Analyze, manage and store genomic data
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2025-03-25 |
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bioconductor-interactionset
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public |
Base Classes for Storing Genomic Interaction Data
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2025-03-25 |
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bioconductor-genomegraphs
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public |
Plotting genomic information from Ensembl
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2025-03-25 |
