bioconda / packages / bioconductor-scpipe 1.16.0

pipeline for single cell RNA-seq data analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.16.0
  • osx-64  v1.16.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-scpipe
conda install -c bioconda/label/gcc7 bioconductor-scpipe
conda install -c bioconda/label/cf201901 bioconductor-scpipe

Description

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.


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