| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-bsgenome.mmusculus.ucsc.mm10 | public | Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6) | 2025-04-22 |
| bioconductor-cardinal | public | A mass spectrometry imaging toolbox for statistical analysis | 2025-04-22 |
| bioconductor-customprodb | public | Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search | 2025-04-22 |
| bioconductor-pchicdata | public | Promoter Capture Hi-C data | 2025-04-22 |
| bioconductor-chicago | public | CHiCAGO: Capture Hi-C Analysis of Genomic Organization | 2025-04-22 |
| bioconductor-gothic | public | Binomial test for Hi-C data analysis | 2025-04-22 |
| bioconductor-medips | public | DNA IP-seq data analysis | 2025-04-22 |
| bioconductor-masigpro | public | Significant Gene Expression Profile Differences in Time Course Gene Expression Data | 2025-04-22 |
| bioconductor-ihw | public | Independent Hypothesis Weighting | 2025-04-22 |
| r-samr | public | Significance Analysis of Microarrays | 2025-04-22 |
| r-wgcna | public | Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization. | 2025-04-22 |
| bioconductor-metagenomeseq | public | Statistical analysis for sparse high-throughput sequencing | 2025-04-22 |
| bioconductor-hilbertvis | public | Hilbert curve visualization | 2025-04-22 |
| bioconductor-methylkit | public | DNA methylation analysis from high-throughput bisulfite sequencing results | 2025-04-22 |
| bioconductor-fastseg | public | fastseg - a fast segmentation algorithm | 2025-04-22 |
| bioconductor-repitools | public | Epigenomic tools | 2025-04-22 |
| bioconductor-ringo | public | R Investigation of ChIP-chip Oligoarrays | 2025-04-22 |
| bioconductor-noiseq | public | Exploratory analysis and differential expression for RNA-seq data | 2025-04-22 |
| bioconductor-alpine | public | alpine | 2025-04-22 |
| bioconductor-bionet | public | Routines for the functional analysis of biological networks | 2025-04-22 |
| bioconductor-bsgenome.celegans.ucsc.ce10 | public | No Summary | 2025-04-22 |
| bioconductor-rcas | public | RNA Centric Annotation System | 2025-04-22 |
| bioconductor-rhtslib | public | HTSlib high-throughput sequencing library as an R package | 2025-04-22 |
| bioconductor-ensembldb | public | Utilities to create and use Ensembl-based annotation databases | 2025-04-22 |
| bioconductor-annotationhub | public | Client to access AnnotationHub resources | 2025-04-22 |
