bioconda / packages / bioconductor-bionet 1.54.0

Routines for the functional analysis of biological networks

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.40.0
  • osx-64  v1.38.0
  • noarch  v1.54.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-bionet
conda install -c bioconda/label/gcc7 bioconductor-bionet
conda install -c bioconda/label/cf201901 bioconductor-bionet

Description

This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.


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