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bioconda / packages / bioconductor-bionet 1.60.0

Routines for the functional analysis of biological networks


Info: This package contains files in non-standard labels.
  • linux-64 v1.40.0
  • osx-64 v1.38.0
  • noarch v1.60.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-bionet
conda install -c "bioconda/label/cf201901" bioconductor-bionet
conda install -c "bioconda/label/gcc7" bioconductor-bionet


This package provides functions for the integrated analysis of protein-protein interaction networks and the detection of functional modules. Different datasets can be integrated into the network by assigning p-values of statistical tests to the nodes of the network. E.g. p-values obtained from the differential expression of the genes from an Affymetrix array are assigned to the nodes of the network. By fitting a beta-uniform mixture model and calculating scores from the p-values, overall scores of network regions can be calculated and an integer linear programming algorithm identifies the maximum scoring subnetwork.

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