bioconda / packages / bioconductor-ringo 1.52.0

R Investigation of ChIP-chip Oligoarrays

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.52.0
  • osx-64  v1.52.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-ringo
conda install -c bioconda/label/gcc7 bioconductor-ringo
conda install -c bioconda/label/cf201901 bioconductor-ringo

Description

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

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