| Package Name | Access | Summary | Updated |
|---|---|---|---|
| evidencemodeler | public | Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures | 2025-05-29 |
| beagle-lib | public | general purpose library for evaluating the likelihood of sequence evolution on trees | 2025-05-29 |
| ionquant | public | A label free quantification tool | 2025-05-29 |
| rtg-tools | public | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation. | 2025-05-29 |
| phylopypruner | public | Tree-based orthology inference. | 2025-05-29 |
| entrez-direct | public | Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | 2025-05-28 |
| mcl | public | MCL - a cluster algorithm for graphs | 2025-05-28 |
| btllib | public | Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab. | 2025-05-28 |
| r-sleuth | public | Tools for investigating RNA-Seq. | 2025-05-28 |
| metabat2 | public | Metagenome binning. | 2025-05-28 |
| vidjil-algo | public | Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes. | 2025-05-28 |
| mmpdb | public | A package to identify matched molecular pairs and use them to predict property changes | 2025-05-28 |
| digest | public | Fast, multi-use k-mer sub-sampling library | 2025-05-28 |
| arvados-python-client | public | Python API for Arvados | 2025-05-28 |
| cutadapt | public | Trim adapters from high-throughput sequencing reads | 2025-05-28 |
| unmicst | public | UNMICST - UnMicst Nuclear Segmentation Tool | 2025-05-28 |
| metagraph | public | Ultra Scalable Framework for DNA Search, Alignment, Assembly. | 2025-05-28 |
| salmon | public | Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment | 2025-05-28 |
| smallgenomeutilities | public | A collection of scripts that are useful for dealing with viral RNA NGS data. | 2025-05-28 |
| hhsuite | public | HH-suite3 for fast remote homology detection and deep protein annotation | 2025-05-28 |
| antismash-lite | public | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. | 2025-05-28 |
| bustools | public | bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. | 2025-05-28 |
| kb-python | public | A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing. | 2025-05-28 |
| pling | public | Pling computes the rearrangement distance between plasmids and clusters on their basis | 2025-05-28 |
| gbintk | public | GraphBin-Tk: assembly graph-based metagenomic binning toolkit | 2025-05-28 |
