bioconda / packages / bioconductor-geneexpressionsignature 1.40.0

Gene Expression Signature based Similarity Metric

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.40.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-geneexpressionsignature
conda install -c bioconda/label/gcc7 bioconductor-geneexpressionsignature

Description

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.


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