| Package Name | Access | Summary | Updated |
|---|---|---|---|
| arvados-python-client | public | Python API for Arvados | 2025-05-28 |
| cutadapt | public | Trim adapters from high-throughput sequencing reads | 2025-05-28 |
| unmicst | public | UNMICST - UnMicst Nuclear Segmentation Tool | 2025-05-28 |
| metagraph | public | Ultra Scalable Framework for DNA Search, Alignment, Assembly. | 2025-05-28 |
| salmon | public | Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment | 2025-05-28 |
| smallgenomeutilities | public | A collection of scripts that are useful for dealing with viral RNA NGS data. | 2025-05-28 |
| hhsuite | public | HH-suite3 for fast remote homology detection and deep protein annotation | 2025-05-28 |
| antismash-lite | public | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. | 2025-05-28 |
| bustools | public | bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. | 2025-05-28 |
| kb-python | public | A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing. | 2025-05-28 |
| pling | public | Pling computes the rearrangement distance between plasmids and clusters on their basis | 2025-05-28 |
| gbintk | public | GraphBin-Tk: assembly graph-based metagenomic binning toolkit | 2025-05-28 |
| kmer-jellyfish | public | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence | 2025-05-27 |
| kat | public | KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts | 2025-05-27 |
| scripps-msms | public | Fast algorithm for computing molecular surfaces | 2025-05-27 |
| metacompass | public | MetaCompass: Reference-guided Assembly of Metagenomes. | 2025-05-27 |
| igv-notebook | public | Package for embedding the igv.js genome visualization in IPython notebooks. | 2025-05-27 |
| spaln | public | Map and align a set of cDNA/EST or protein sequences onto a genome. | 2025-05-27 |
| ltr_harvest_parallel | public | Perl wrapper for parallel execution of LTR_harvest | 2025-05-27 |
| hictkpy | public | Python bindings for hictk: read and write .cool and .hic files directly from Python | 2025-05-27 |
| metacache | public | MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin. | 2025-05-26 |
| r-eggnog | public | EggNOG database annotations. | 2025-05-26 |
| r-panther | public | PANTHER database annotations. | 2025-05-26 |
| dagchainer | public | DAGchainer identifies syntenic regions. | 2025-05-25 |
| deepvariant | public | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | 2025-05-24 |
