| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-panther | public | PANTHER database annotations. | 2025-05-26 |
| dagchainer | public | DAGchainer identifies syntenic regions. | 2025-05-25 |
| deepvariant | public | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | 2025-05-24 |
| ratt | public | Rapid Annotation Transfer Tool | 2025-05-24 |
| perl-devel-size | public | Perl extension for finding the memory usage of Perl variables | 2025-05-24 |
| shortstack | public | ShortStack: Comprehensive annotation and quantification of small RNA genes | 2025-05-24 |
| bio2zarr | public | Convert bioinformatics data to Zarr | 2025-05-24 |
| metator | public | Metagenomic binning based on Hi-C data. | 2025-05-23 |
| pegasusio | public | PegasusIO is the IO package for Pegasus. | 2025-05-22 |
| ms2query | public | Reliable and fast MS/MS spectral based analogue search. | 2025-05-22 |
| pyseer | public | Sequence Element Enrichment Analysis (SEER), python implementation. | 2025-05-22 |
| palantir | public | Palantir for modeling continuous cell state and cell fate choices in single cell data | 2025-05-22 |
| ucsc-cell-browser | public | A browser for single-cell data, main site at http://cells.ucsc.edu. UCSC Cellbrowser, an interactive browser for single cell data. Includes importers and basic pipelines for text files, Seurat, Scanpy and Cellranger. All Javascript - does not require a server backend. | 2025-05-22 |
| biobb_structure_checking | public | BioBB_structure_checking performs MDWeb structure checking set as a command line utility. | 2025-05-22 |
| pisad | public | pisad - Phsaed Intraspecies Sample Anomalies Detection tool | 2025-05-22 |
| repaq | public | A fast lossless FASTQ compressor with ultra-high compression ratio. | 2025-05-22 |
| genomic_address_service | public | Genomic Address Service: De novo clustering and cluster address assignment | 2025-05-22 |
| pigpen | public | A package to quantify RNA localization using OINC-seq data. | 2025-05-21 |
| triqler | public | A combined identification and quantification error model of label-free protein quantification. | 2025-05-21 |
| immuneml | public | immuneML is a software platform for machine learning analysis of immune receptor repertoires. | 2025-05-21 |
| smithwaterman | public | Smith-waterman-gotoh alignment algorithm. | 2025-05-21 |
| treeswirl | public | TreeSwirl: A tool to infer locus-specific population mixtures from linked genome-wide allele frequencies. | 2025-05-21 |
| juicertools | public | Visualization and analysis software for Hi-C data | 2025-05-21 |
| radte | public | Reconciliation-Assisted Divergence Time Estimation for gene families. | 2025-05-21 |
| distle | public | Fast distance matrix calculations on fasta and cgmlst files | 2025-05-21 |
