bioconda / packages / r-bisquerna 1.0.5

Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression.

Installers

conda install

  • noarch  v1.0.5
To install this package with conda run:
conda install -c bioconda r-bisquerna

Description

A reference-based method utilizes single-cell information to generate a signature matrix and transformation of bulk expression for accurate regression based estimates. A marker-based method utilizes known cell-specific marker genes to measure relative abundances across samples. For more details, see Jew and Alvarez et al (2019) .


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