bioconductor-category
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public |
Category Analysis
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2024-12-27 |
bioconductor-tmsig
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public |
Tools for Molecular Signatures
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2024-12-27 |
bioconductor-promise
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public |
PRojection Onto the Most Interesting Statistical Evidence
|
2024-12-27 |
bioconductor-singscore
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public |
Rank-based single-sample gene set scoring method
|
2024-12-27 |
bioconductor-bicare
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public |
Biclustering Analysis and Results Exploration
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2024-12-27 |
bioconductor-cosmosr
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public |
COSMOS (Causal Oriented Search of Multi-Omic Space)
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2024-12-27 |
bioconductor-gsri
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public |
Gene Set Regulation Index
|
2024-12-27 |
bioconductor-cepo
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public |
Cepo for the identification of differentially stable genes
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2024-12-27 |
bioconductor-gsvadata
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public |
Data employed in the vignette of the GSVA package
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2024-12-27 |
bioconductor-splinetimer
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public |
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
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2024-12-27 |
bioconductor-tissueenrich
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public |
Tissue-specific gene enrichment analysis
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2024-12-27 |
bioconductor-slalom
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public |
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data
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2024-12-27 |
bioconductor-gep2pep
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public |
Creation and Analysis of Pathway Expression Profiles (PEPs)
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2024-12-27 |
bioconductor-netsmooth
|
public |
Network smoothing for scRNAseq
|
2024-12-27 |
r-shinyngs
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public |
Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.
|
2024-12-27 |
bioconductor-sparrow
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public |
Take command of set enrichment analyses through a unified interface
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2024-12-27 |
bioconductor-mlinterfaces
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public |
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
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2024-12-27 |
bioconductor-protgear
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public |
Protein Micro Array Data Management and Interactive Visualization
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2024-12-27 |
bioconductor-sva
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public |
Surrogate Variable Analysis
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2024-12-27 |
bioconductor-covrna
|
public |
Multivariate Analysis of Transcriptomic Data
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2024-12-27 |
bioconductor-genemeta
|
public |
MetaAnalysis for High Throughput Experiments
|
2024-12-27 |
bioconductor-ihwpaper
|
public |
Reproduce figures in IHW paper
|
2024-12-27 |
bioconductor-peca
|
public |
Probe-level Expression Change Averaging
|
2024-12-27 |
bioconductor-tilingarray
|
public |
Transcript mapping with high-density oligonucleotide tiling arrays
|
2024-12-27 |
bioconductor-classifyr
|
public |
A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing
|
2024-12-27 |
r-sartools
|
public |
Statistical Analysis of RNA-Seq data
|
2024-12-27 |
bioconductor-cntools
|
public |
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
|
2024-12-27 |
bioconductor-a4base
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public |
Automated Affymetrix Array Analysis Base Package
|
2024-12-27 |
bioconductor-annmap
|
public |
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
|
2024-12-27 |
bioconductor-spatialheatmap
|
public |
spatialHeatmap
|
2024-12-27 |
bioconductor-zinbwave
|
public |
Zero-Inflated Negative Binomial Model for RNA-Seq Data
|
2024-12-27 |
bioconductor-nbamseq
|
public |
Negative Binomial Additive Model for RNA-Seq Data
|
2024-12-27 |
r-orqa
|
public |
Assess repeatability, accuracy and corss-platform agreement of titration microarray data based on order restricted inference procedures
|
2024-12-27 |
bioconductor-countsimqc
|
public |
Compare Characteristic Features of Count Data Sets
|
2024-12-27 |
bioconductor-predasampledata
|
public |
expression and copy number data on clear cell renal carcinoma samples
|
2024-12-27 |
bioconductor-sim
|
public |
Integrated Analysis on two human genomic datasets
|
2024-12-27 |
bioconductor-biseq
|
public |
Processing and analyzing bisulfite sequencing data
|
2024-12-27 |
bioconductor-fastliquidassociation
|
public |
functions for genome-wide application of Liquid Association
|
2024-12-27 |
bioconductor-padog
|
public |
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
|
2024-12-27 |
bioconductor-mapredictdsc
|
public |
Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
|
2024-12-27 |
bioconductor-humanstemcell
|
public |
Human Stem Cells time course experiment
|
2024-12-27 |
bioconductor-keggorthology
|
public |
graph support for KO, KEGG Orthology
|
2024-12-27 |
bioconductor-neve2006
|
public |
expression and CGH data on breast cancer cell lines
|
2024-12-27 |
bioconductor-kegglincs
|
public |
Visualize all edges within a KEGG pathway and overlay LINCS data
|
2024-12-27 |
bioconductor-sbgnview
|
public |
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"
|
2024-12-27 |
bioconductor-dose
|
public |
Disease Ontology Semantic and Enrichment analysis
|
2024-12-27 |
bioconductor-rcpi
|
public |
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
|
2024-12-27 |
bioconductor-translatome
|
public |
Comparison between multiple levels of gene expression
|
2024-12-27 |
bioconductor-rrvgo
|
public |
Reduce + Visualize GO
|
2024-12-27 |
bioconductor-spsimseq
|
public |
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
|
2024-12-27 |