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bioconda / packages / bioconductor-annmap 1.44.0

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.22.0
  • osx-64 v1.22.0
  • noarch v1.44.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-annmap
conda install bioconda/label/cf201901::bioconductor-annmap
conda install bioconda/label/gcc7::bioconductor-annmap

Description

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl. The annmap database can be downloaded from: https://figshare.manchester.ac.uk/account/articles/16685071


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