bioconda / packages / bioconductor-zinbwave 1.10.0

Zero-Inflated Negative Binomial Model for RNA-Seq Data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.2.0
  • noarch  v1.10.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-zinbwave
conda install -c bioconda/label/gcc7 bioconductor-zinbwave
conda install -c bioconda/label/cf201901 bioconductor-zinbwave

Description

Implements a general and flexible zero-inflated negative binomial model that can be used to provide a low-dimensional representations of single-cell RNA-seq data. The model accounts for zero inflation (dropouts), over-dispersion, and the count nature of the data. The model also accounts for the difference in library sizes and optionally for batch effects and/or other covariates, avoiding the need for pre-normalize the data.

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