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bioconductor-pvca
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public |
Principal Variance Component Analysis (PVCA)
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2024-12-19 |
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bioconductor-spia
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public |
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
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2024-12-19 |
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r-nanostringnorm
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public |
A set of tools for normalizing, diagnostics and visualization of NanoString nCounter data.
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2024-12-19 |
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bioconductor-doscheda
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public |
A DownStream Chemo-Proteomics Analysis Pipeline
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2024-12-19 |
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bioconductor-rvs
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public |
Computes estimates of the probability of related individuals sharing a rare variant
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2024-12-19 |
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bioconductor-lpnet
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public |
Linear Programming Model for Network Inference
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2024-12-19 |
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bioconductor-affycontam
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public |
structured corruption of affymetrix cel file data
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2024-12-19 |
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bioconductor-flowdensity
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public |
Sequential Flow Cytometry Data Gating
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2024-12-19 |
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bioconductor-trio
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public |
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
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2024-12-19 |
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bioconductor-flowtrans
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public |
Parameter Optimization for Flow Cytometry Data Transformation
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2024-12-19 |
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bioconductor-rexposome
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public |
Exposome exploration and outcome data analysis
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2024-12-19 |
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bioconductor-cardinalworkflows
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public |
Datasets and workflows for the Cardinal MSI
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2024-12-19 |
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bioconductor-cnorfeeder
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public |
Integration of CellNOptR to add missing links
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2024-12-19 |
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bioconductor-ncigraph
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public |
Pathways from the NCI Pathways Database
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2024-12-19 |
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bioconductor-kcsmart
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public |
Multi sample aCGH analysis package using kernel convolution
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2024-12-19 |
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bioconductor-cghnormaliter
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public |
Normalization of array CGH data with imbalanced aberrations.
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2024-12-19 |
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bioconductor-spikeinsubset
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public |
Part of Affymetrix's Spike-In Experiment Data
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2024-12-19 |
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bioconductor-flowploidy
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public |
Analyze flow cytometer data to determine sample ploidy
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2024-12-19 |
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bioconductor-acgh
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public |
Classes and functions for Array Comparative Genomic Hybridization data
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2024-12-19 |
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bioconductor-tpp
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public |
Analyze thermal proteome profiling (TPP) experiments
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2024-12-19 |
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bioconductor-allmll
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public |
A subset of arrays from a large acute lymphoblastic leukemia (ALL) study
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2024-12-19 |
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bioconductor-rnits
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public |
R Normalization and Inference of Time Series data
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2024-12-19 |
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bioconductor-normqpcr
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public |
Functions for normalisation of RT-qPCR data
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2024-12-19 |
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bioconductor-plier
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public |
Implements the Affymetrix PLIER algorithm
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2024-12-19 |
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bioconductor-flowviz
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public |
Visualization for flow cytometry
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2024-12-19 |
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bioconductor-anota
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public |
ANalysis Of Translational Activity (ANOTA).
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2024-12-19 |
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r-grain
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public |
Probability propagation in graphical independence networks, also known as Bayesian networks or probabilistic expert systems.
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2024-12-19 |
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bioconductor-frmatools
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public |
Frozen RMA Tools
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2024-12-19 |
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bioconductor-liebermanaidenhic2009
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public |
Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)
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2024-12-19 |
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bioconductor-eximir
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public |
R functions for the normalization of Exiqon miRNA array data
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2024-12-19 |
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r-isogene
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public |
Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.
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2024-12-19 |
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bioconductor-hapfabia
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public |
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
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2024-12-19 |
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bioconductor-rtopper
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public |
This package is designed to perform Gene Set Analysis across multiple genomic platforms
|
2024-12-19 |
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bioconductor-hyperdraw
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public |
Visualizing Hypergaphs
|
2024-12-19 |
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bioconductor-spikein
|
public |
Affymetrix Spike-In Experiment Data
|
2024-12-19 |
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bioconductor-makecdfenv
|
public |
CDF Environment Maker
|
2024-12-19 |
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bioconductor-panp
|
public |
Presence-Absence Calls from Negative Strand Matching Probesets
|
2024-12-19 |
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bioconductor-cardinal
|
public |
A mass spectrometry imaging toolbox for statistical analysis
|
2024-12-19 |
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bioconductor-flowtime
|
public |
Annotation and analysis of biological dynamical systems using flow cytometry
|
2024-12-19 |
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bioconductor-cghregions
|
public |
Dimension Reduction for Array CGH Data with Minimal Information Loss.
|
2024-12-19 |
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r-hemdag
|
public |
a collection of Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs).
|
2024-12-19 |
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bioconductor-cormotif
|
public |
Correlation Motif Fit
|
2024-12-19 |
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bioconductor-cytodx
|
public |
Robust prediction of clinical outcomes using cytometry data without cell gating
|
2024-12-19 |
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r-cp4p
|
public |
Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
|
2024-12-19 |
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bioconductor-affydata
|
public |
Affymetrix Data for Demonstration Purpose
|
2024-12-19 |
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r-mutoss
|
public |
Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.
|
2024-12-19 |
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bioconductor-abarray
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public |
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
|
2024-12-19 |
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bioconductor-rain
|
public |
Rhythmicity Analysis Incorporating Non-parametric Methods
|
2024-12-19 |
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bioconductor-paircompviz
|
public |
Multiple comparison test visualization
|
2024-12-19 |
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bioconductor-biocviews
|
public |
Categorized views of R package repositories
|
2024-12-19 |
