bioconda / packages / bioconductor-panp 1.64.0

Presence-Absence Calls from Negative Strand Matching Probesets


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.50.0
  • osx-64  v1.50.0
  • noarch  v1.64.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-panp
conda install -c bioconda/label/gcc7 bioconductor-panp
conda install -c bioconda/label/cf201901 bioconductor-panp


A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

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