bioconda / packages / bioconductor-trio 3.26.0

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v3.18.0
  • osx-64  v3.18.0
  • noarch  v3.26.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-trio
conda install -c bioconda/label/gcc7 bioconductor-trio
conda install -c bioconda/label/cf201901 bioconductor-trio


Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.

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