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bioconductor-a4classif
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public |
Automated Affymetrix Array Analysis Classification Package
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2024-12-19 |
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bioconductor-stategra
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public |
Classes and methods for multi-omics data integration
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2024-12-19 |
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bioconductor-aracne.networks
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public |
ARACNe-inferred gene networks from TCGA tumor datasets
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2024-12-19 |
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bioconductor-curatedbladderdata
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public |
Bladder Cancer Gene Expression Analysis
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2024-12-19 |
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bioconductor-cghcall
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public |
Calling aberrations for array CGH tumor profiles.
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2024-12-19 |
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bioconductor-cycle
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public |
Significance of periodic expression pattern in time-series data
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2024-12-19 |
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bioconductor-flowclean
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public |
flowClean
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2024-12-18 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2024-12-18 |
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bioconductor-simat
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public |
GC-SIM-MS data processing and alaysis tool
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2024-12-18 |
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bioconductor-chimphumanbraindata
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public |
Chimp and human brain data package
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2024-12-18 |
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bioconductor-consensusclusterplus
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public |
ConsensusClusterPlus
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2024-12-18 |
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bioconductor-diggitdata
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public |
Example data for the diggit package
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2024-12-18 |
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bioconductor-vsn
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public |
Variance stabilization and calibration for microarray data
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2024-12-18 |
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bioconductor-tronco
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public |
TRONCO, an R package for TRanslational ONCOlogy
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2024-12-18 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
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2024-12-18 |
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r-diffcorr
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public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
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2024-12-18 |
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bioconductor-cll
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public |
A Package for CLL Gene Expression Data
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2024-12-18 |
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bioconductor-metabomxtr
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public |
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
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2024-12-18 |
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r-tidygenomics
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public |
Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.
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2024-12-18 |
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bioconductor-dirichletmultinomial
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public |
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
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2024-12-18 |
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bioconductor-metaseq
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public |
Meta-analysis of RNA-Seq count data in multiple studies
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2024-12-18 |
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bioconductor-ampaffyexample
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public |
Example of Amplified Data
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2024-12-18 |
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bioconductor-turbonorm
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public |
A fast scatterplot smoother suitable for microarray normalization
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2024-12-18 |
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bioconductor-ruvnormalize
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public |
RUV for normalization of expression array data
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2024-12-18 |
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bioconductor-ruvcorr
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public |
Removal of unwanted variation for gene-gene correlations and related analysis
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2024-12-18 |
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bioconductor-tmixclust
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public |
Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines
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2024-12-18 |
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bioconductor-gwasdata
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public |
Data used in the examples and vignettes of the GWASTools package
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2024-12-18 |
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bioconductor-complexheatmap
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public |
Make Complex Heatmaps
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2024-12-18 |
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bioconductor-derfinderhelper
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public |
derfinder helper package
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2024-12-18 |
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r-perfmeas
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public |
Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
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2024-12-18 |
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bioconductor-nethet
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public |
A bioconductor package for high-dimensional exploration of biological network heterogeneity
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2024-12-18 |
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bioconductor-flowchic
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public |
Analyze flow cytometric data using histogram information
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2024-12-18 |
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r-imputelcmd
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public |
The package contains a collection of functions for left-censored missing data imputation. Left-censoring is a special case of missing not at random (MNAR) mechanism that generates non-responses in proteomics experiments. The package also contains functions to artificially generate peptide/protein expression data (log-transformed) as random draws from a multivariate Gaussian distribution as well as a function to generate missing data (both randomly and non-randomly). For comparison reasons, the package also contains several wrapper functions for the imputation of non-responses that are missing at random. * New functionality has been added: a hybrid method that allows the imputation of missing values in a more complex scenario where the missing data are both MAR and MNAR.
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2024-12-18 |
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bioconductor-nucleosim
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public |
Generate synthetic nucleosome maps
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2024-12-18 |
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bioconductor-scde
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public |
Single Cell Differential Expression
|
2024-12-18 |
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bioconductor-ebcoexpress
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public |
EBcoexpress for Differential Co-Expression Analysis
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2024-12-18 |
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r-aroma.affymetrix
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public |
A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.
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2024-12-18 |
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bioconductor-healthyflowdata
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public |
Healthy dataset used by the flowMatch package
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2024-12-18 |
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bioconductor-genetclassifier
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public |
Classify diseases and build associated gene networks using gene expression profiles
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2024-12-18 |
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bioconductor-orderedlist
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public |
Similarities of Ordered Gene Lists
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2024-12-18 |
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bioconductor-genomeinfodb
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public |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
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2024-12-18 |
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bioconductor-pvac
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public |
PCA-based gene filtering for Affymetrix arrays
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2024-12-18 |
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bioconductor-siggenes
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public |
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
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2024-12-18 |
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bioconductor-qpcrnorm
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public |
Data-driven normalization strategies for high-throughput qPCR data.
|
2024-12-18 |
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bioconductor-kegggraph
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public |
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
|
2024-12-18 |
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bioconductor-geosubmission
|
public |
Prepares microarray data for submission to GEO
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2024-12-18 |
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bioconductor-diggit
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public |
Inference of Genetic Variants Driving Cellular Phenotypes
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2024-12-18 |
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bioconductor-gaga
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public |
GaGa hierarchical model for high-throughput data analysis
|
2024-12-18 |
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bioconductor-bronchialil13
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public |
time course experiment involving il13
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2024-12-18 |
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bioconductor-affyrnadegradation
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public |
Analyze and correct probe positional bias in microarray data due to RNA degradation
|
2024-12-18 |
