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bioconductor-pvca

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Principal Variance Component Analysis (PVCA)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-pvca

Usage Tracking

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Downloads (Last 6 months): 0

Description

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

About

Summary

Principal Variance Component Analysis (PVCA)

Last Updated

Dec 19, 2024 at 17:01

License

LGPL (>= 2.0)

Total Downloads

32.9K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.20.0
macOS-64 Last supported version: 1.20.0