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r-metama
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public |
Combines either p-values or modified effect sizes from different studies to find differentially expressed genes
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2025-04-22 |
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bioconductor-flowbeads
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public |
flowBeads: Analysis of flow bead data
|
2025-04-22 |
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perl-go-perl
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public |
perl modules for GO and other OBO ontologies
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2025-04-22 |
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pneumocat
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public |
PneumoCaT (Pneumococcal Capsular Typing) uses a two-step step approach to assign capsular type to S.pneumoniae genomic data (Illumina)
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2025-04-22 |
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r-metarnaseq
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public |
Implementation of two p-value combination techniques (inverse normal and Fisher methods). A vignette is provided to explain how to perform a meta-analysis from two independent RNA-seq experiments.
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2025-04-22 |
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r-smvar
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public |
Implements the structural model for variances in order to detect differentially expressed genes from gene expression data
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2025-04-22 |
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reaper
|
public |
Tool for demultiplexing, trimming and filtering sequencing data.
|
2025-04-22 |
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ont-tombo
|
public |
Detection of modified bases from raw nanopore sequencing data.
|
2025-04-22 |
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bioconductor-bsseq
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public |
Analyze, manage and store whole-genome methylation data
|
2025-04-22 |
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bioconductor-isoformswitchanalyzer
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public |
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
|
2025-04-22 |
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bioconductor-drimseq
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public |
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
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2025-04-22 |
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squizz
|
public |
Squizz is a sequence/alignment format checker, but it has some conversion capabilities too.
|
2025-04-22 |
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watchdog-wms
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public |
Watchdog, a WMS for the automated and distributed analysis of large-scale experimental data. The software is implemented in Java and is thus platform-independent. Main feature include + straightforward processing of replicate data + support for distributed computer systems + remote storage support + customizable error detection + manual intervention into workflow execution + GUI for workflow construction using pre-defined modules + a helper script for creating new module definitions + no restriction to specific programming languages + provides a flexible plugin system for extending without modifying the original sources
|
2025-04-22 |
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scanindel
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public |
ScanIndel is a python program to detect indels (insertions and deletions) from NGS data by re-align and de novo assemble soft clipped reads.
|
2025-04-22 |
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bioconductor-affyplm
|
public |
Methods for fitting probe-level models
|
2025-04-22 |
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bioconductor-htsfilter
|
public |
Filter replicated high-throughput transcriptome sequencing data
|
2025-04-22 |
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tassel
|
public |
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium.
|
2025-04-22 |
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bioconductor-recount
|
public |
Explore and download data from the recount project
|
2025-04-22 |
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cpinsim
|
public |
CPINSim is a package for the simulation of protein complex assembly with constrained
protein interaction networks.
|
2025-04-22 |
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perl-try-tiny-retry
|
public |
Just like Try::Tiny, but with retry instead of try.
|
2025-04-22 |
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mykatlas
|
public |
Assists in discoveries of antibiotic-resistance with mykrobe
|
2025-04-22 |
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ga4ghmongo
|
public |
A document based Variant database inspired by ga4gh Variants schema
|
2025-04-22 |
|
bioconductor-flagme
|
public |
Analysis of Metabolomics GC/MS Data
|
2025-04-22 |
|
rambo-k
|
public |
a reference-based tool for rapid and sensitive extraction of one organism´s reads from a mixed NGS dataset
|
2025-04-22 |
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fcsparser
|
public |
A python package for reading raw fcs files
|
2025-04-22 |
