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dimspy
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public |
Python package for data processing of direct-infusion mass spectrometry-based metabolomics and lipidomics data
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2025-04-22 |
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gmap-fusion
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public |
GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.
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2025-04-22 |
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fusion-inspector
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public |
FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki
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2025-04-22 |
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seroba
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public |
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.
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2025-04-22 |
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r-biomark
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public |
Variable selection methods are provided for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used, one based on the stability of model coefficients under perturbation, and the other on higher criticism.
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2025-04-22 |
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bioconductor-rtcga.mrna
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public |
mRNA datasets from The Cancer Genome Atlas Project
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2025-04-22 |
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bioconductor-rtcga
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public |
The Cancer Genome Atlas Data Integration
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2025-04-22 |
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perl-http-server-simple
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public |
Lightweight HTTP server
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2025-04-22 |
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a5-miseq
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public |
A5-miseq is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_
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2025-04-22 |
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novobreak
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public |
local assembly for breakpoint detection in cancer genomes
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2025-04-22 |
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bioconductor-genefu
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public |
Computation of Gene Expression-Based Signatures in Breast Cancer
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2025-04-22 |
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bioconductor-cancersubtypes
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public |
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
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2025-04-22 |
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bioconductor-srap
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public |
Simplified RNA-Seq Analysis Pipeline
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2025-04-22 |
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bioconductor-baalchip
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public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
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2025-04-22 |
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bioconductor-mirnatap.db
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public |
This package holds the database for miRNAtap.
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2025-04-22 |
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break-point-inspector
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public |
BPI uses Manta’s variant calls to re-analyse BAM files and precisely determine the location of the breaks, and applies a set of filters to remove false positives, thereby increasing the accuracy of Manta’s calls.
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2025-04-22 |
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bioconductor-gtrellis
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public |
Genome Level Trellis Layout
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2025-04-22 |
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bioconductor-mutationalpatterns
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public |
Comprehensive genome-wide analysis of mutational processes
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2025-04-22 |
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seq-seq-pan
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public |
seq-seq-pan
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2025-04-22 |
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sicer
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public |
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
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2025-04-22 |
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repenrich
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public |
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
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2025-04-22 |
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r-maldirppa
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public |
Provides methods for quality control and robust pre-processing and analysis of MALDI mass spectrometry data.
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2025-04-22 |
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r-purbayes
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public |
PurBayes is an MCMC-based algorithm that uses next-generation sequencing data to estimate tumor purity and clonality for paired tumor-normal data.
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2025-04-22 |
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r-icluster
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public |
Integrative clustering of multiple genomic data types using a joint latent variable model.
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2025-04-22 |
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panx
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public |
Microbial pan-genome analysis and exploration tool
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2025-04-22 |
