SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.0.0
  • osx-64  v1.0.0
  • noarch  v1.0.2
To install this package with conda run one of the following:
conda install -c bioconda seroba
conda install -c bioconda/label/cf201901 seroba

Description

SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references. You can use SeroBA to download references from (https://github.com/phe-bioinformatics/PneumoCaT) to do identify the capsular type of Streptococcus pneumoniae.


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