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SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.0.0
  • linux-64 v1.0.0
  • noarch v1.0.2

conda install

To install this package run one of the following:
conda install bioconda::seroba
conda install bioconda/label/cf201901::seroba

Description

SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references. You can use SeroBA to download references from (https://github.com/phe-bioinformatics/PneumoCaT) to do identify the capsular type of Streptococcus pneumoniae.


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