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toulligqc
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public |
A post sequencing QC tool for Oxford Nanopore sequencers.
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2025-04-22 |
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bioconductor-snplocs.hsapiens.dbsnp144.grch38
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public |
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
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2025-04-22 |
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progressivemauve
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public |
progressiveMauve computes multiple genome alignment with gene gain, loss and rearrangement
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2025-04-22 |
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nanopore_simulation
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public |
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
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2025-04-22 |
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hg-color
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public |
HG-CoLoR (Hybrid Graph for the error Correction of Long Reads) is a hybrid method for the error correction of long reads that follows the main idea from NaS to produce corrected long reads from assemblies of related accurate short reads.
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2025-04-22 |
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bioconductor-splatter
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public |
Simple Simulation of Single-cell RNA Sequencing Data
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2025-04-22 |
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mockinbird
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public |
A fully automatic and reproducible PAR-CLIP analysis pipeline
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2025-04-22 |
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smina
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public |
A fork of AutoDock Vina that is customized to better support scoring function development and high-performance energy minimization.
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2025-04-22 |
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asn2gb
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public |
asn2gb converts ASN1 format sequence records to Genbank format
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2025-04-22 |
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sibelia
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public |
Genome comparison via de Bruijn graph.
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2025-04-22 |
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structureharvester
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public |
structureHarvester.py is a Python script capable of extracting all the relevant data from STRUCTURE results files
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2025-04-22 |
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linkage2allegro
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public |
Converts between the output linkage formats of Merlin, Simwalk, Genehunter, and Swiftlink into Allegro.
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2025-04-22 |
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ragout
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public |
Chromosome-level scaffolding using multiple references
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2025-04-22 |
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python-mailund-newick
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public |
Another python module to read and write the Newick format
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2025-04-22 |
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python-newick
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public |
A python module to read and write the Newick format.
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2025-04-22 |
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shortreadconnector
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public |
Short read connector enables the comparisons of two read sets
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2025-04-22 |
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r-gkmsvm
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public |
Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms.
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2025-04-22 |
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pgsa
|
public |
Pseudogenome Suffix Array is a compact index for collections of reads from sequencing.
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2025-04-22 |
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vcfpy
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public |
Python 3 VCF library with good support for both reading and writing
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2025-04-22 |
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isatools
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public |
Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments
|
2025-04-22 |
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fastindep
|
public |
A fast random heuristic algorithm for identifying large sets of unrelated individuals and unrelated markers
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2025-04-22 |
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bioconductor-derfinderplot
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public |
Plotting functions for derfinder
|
2025-04-22 |
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pubchempy
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public |
A simple Python wrapper around the PubChem PUG REST API.
|
2025-04-22 |
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ucsc-expmatrixtobarchartbed
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public |
Generate a barChart bed6+5 file from a matrix, meta data, and coordinates.
|
2025-04-22 |
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ucsc-calc
|
public |
Little command line calculator
|
2025-04-22 |
