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anvio-minimal
|
public |
An interactive analysis and visualization platform for omics data
|
2024-03-25 |
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rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website
|
2024-03-24 |
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mugsy
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public |
Mugsy is a multiple whole genome aligner.
|
2024-03-21 |
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rnachipintegrator
|
public |
Analyse genes against peak data, and vice versa
|
2024-03-18 |
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mafft
|
public |
Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
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2024-03-14 |
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rdp_classifier
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public |
Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus
|
2024-03-09 |
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drep
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public |
De-replication of microbial genomes assembled from multiple samples
|
2024-03-01 |
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ont-fast5-api
|
public |
Oxford Nanopore Technologies fast5 API software
|
2024-02-28 |
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dudes
|
public |
DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics
|
2024-02-22 |
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scanpy-scripts
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public |
Scripts for using scanpy from the command line
|
2024-02-21 |
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antismash
|
public |
antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell
|
2024-02-14 |
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purge_haplotigs
|
public |
Pipeline to help with curating heterozygous diploid genome assemblies.
|
2024-02-09 |
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novoplasty
|
public |
The organelle assembler and heteroplasmy caller
|
2024-02-05 |
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ephemeris
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public |
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
|
2024-02-01 |
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perl-biox-seq
|
public |
a basic but fast biological sequence object and associated parsers
|
2024-01-25 |
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gtfparse
|
public |
GTF Parsing
|
2024-01-17 |
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crossmap
|
public |
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies.
|
2024-01-12 |
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query_phenomizer
|
public |
Tool for query and parsing the phenomizer tool
|
2024-01-10 |
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vcf2db
|
public |
Create a gemini-compatible database from a VCF
|
2024-01-10 |
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vcfpy
|
public |
Python 3 VCF library with good support for both reading and writing
|
2024-01-10 |
|
cannoli
|
public |
Distributed execution of bioinformatics tools on Apache Spark
|
2024-01-05 |
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adam
|
public |
Genomics analysis platform built on Apache Avro, Apache Spark, and Apache Parquet
|
2024-01-05 |
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bioconductor-starbiotrek
|
public |
StarBioTrek
|
2023-12-22 |
|
bioconductor-starank
|
public |
Stability Ranking
|
2023-12-22 |
|
bioconductor-rnainteract
|
public |
Estimate Pairwise Interactions from multidimensional features
|
2023-12-22 |
|
bioconductor-simbindprofiles
|
public |
Similar Binding Profiles
|
2023-12-22 |
|
bioconductor-spidermir
|
public |
SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
|
2023-12-21 |
|
igdiscover
|
public |
Analyze antibody repertoires and discover new V genes
|
2023-12-20 |
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bioconductor-motifbreakr
|
public |
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
|
2023-12-20 |
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bioconductor-psygenet2r
|
public |
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
|
2023-12-20 |
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bioconductor-ringo
|
public |
R Investigation of ChIP-chip Oligoarrays
|
2023-12-19 |
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bioconductor-bgeedb
|
public |
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
|
2023-12-19 |
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bioconductor-cellhts2
|
public |
Analysis of cell-based screens - revised version of cellHTS
|
2023-12-19 |
|
illumina-utils
|
public |
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.8+).
|
2023-12-16 |
|
bioconductor-chromstar
|
public |
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
|
2023-12-16 |
|
bioconductor-funchip
|
public |
Clustering and Alignment of ChIP-Seq peaks based on their shapes
|
2023-12-16 |
|
sequana
|
public |
A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis
|
2023-12-13 |
|
bioconductor-yapsa
|
public |
Yet Another Package for Signature Analysis
|
2023-12-13 |
|
bioconductor-dmrcatedata
|
public |
Data Package for DMRcate
|
2023-12-12 |
|
bioconductor-macat
|
public |
MicroArray Chromosome Analysis Tool
|
2023-12-12 |
|
bioconductor-splinter
|
public |
Splice Interpreter of Transcripts
|
2023-12-12 |
|
bioconductor-metabosignal
|
public |
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
|
2023-12-12 |
|
bioconductor-rarevariantvis
|
public |
A suite for analysis of rare genomic variants in whole genome sequencing data
|
2023-12-12 |
|
bioconductor-interminer
|
public |
R Interface with InterMine-Powered Databases
|
2023-12-12 |
|
bioconductor-risa
|
public |
Converting experimental metadata from ISA-tab into Bioconductor data structures
|
2023-12-11 |
|
bioconductor-quartpac
|
public |
Identification of mutational clusters in protein quaternary structures.
|
2023-12-11 |
|
bioconductor-elmer
|
public |
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
|
2023-12-10 |
|
bioconductor-geometadb
|
public |
A compilation of metadata from NCBI GEO
|
2023-12-10 |
|
bioconductor-sradb
|
public |
A compilation of metadata from NCBI SRA and tools
|
2023-12-10 |
|
bioconductor-ensemblvep
|
public |
R Interface to Ensembl Variant Effect Predictor
|
2023-12-09 |
