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bioconductor-geometadb

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A compilation of metadata from NCBI GEO

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-geometadb

Usage Tracking

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1.64.0
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Total downloads: 0

Description

The NCBI Gene Expression Omnibus (GEO) represents the largest public repository of microarray data. However, finding data of interest can be challenging using current tools. GEOmetadb is an attempt to make access to the metadata associated with samples, platforms, and datasets much more feasible. This is accomplished by parsing all the NCBI GEO metadata into a SQLite database that can be stored and queried locally. GEOmetadb is simply a thin wrapper around the SQLite database along with associated documentation. Finally, the SQLite database is updated regularly as new data is added to GEO and can be downloaded at will for the most up-to-date metadata. GEOmetadb paper: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/23/2798 .

About

Summary

A compilation of metadata from NCBI GEO

Information Last Updated

Jun 21, 2025 at 19:56

License

Artistic-2.0

Total Downloads

34.7K

Platforms

Linux 64 Version: 1.42.0
macOS 64 Version: 1.42.0
noarch Version: 1.68.1