bioconda / packages / bioconductor-rnainteract 1.36.0

Estimate Pairwise Interactions from multidimensional features

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.28.0
  • osx-64  v1.26.0
  • noarch  v1.36.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-rnainteract
conda install -c bioconda/label/gcc7 bioconductor-rnainteract
conda install -c bioconda/label/cf201901 bioconductor-rnainteract

Description

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

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