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sipros
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public |
Tools for stable isotopic mass spectrometry-based metaproteomics
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2024-10-09 |
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kmercamel
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public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings
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2024-10-09 |
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sequali
|
public |
Fast sequencing quality metrics
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2024-10-09 |
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orthologer
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public |
Establish orthology among fasta files.
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2024-10-09 |
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patchify
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public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
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2024-10-09 |
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delly
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public |
Structural variant discovery by integrated paired-end and split-read analysis
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2024-10-09 |
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tefinder
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public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
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2024-10-09 |
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woltka
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public |
versatile meta-omic data classifier
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2024-10-09 |
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scitrack
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public |
SciTrack provides basic logging capabilities to track scientific computations.
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2024-10-08 |
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get_mnv
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public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
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2024-10-08 |
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pyhmmer
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public |
Cython bindings and Python interface to HMMER3.
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2024-10-08 |
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pgscatalog.match
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public |
Tools for matching variants in PGS scoring files and target variant information files.
|
2024-10-08 |
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snakemake-executor-plugin-kubernetes
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public |
A snakemake executor plugin for submission of jobs to Kubernetes
|
2024-10-08 |
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civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2024-10-08 |
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pepnovo
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public |
No Summary
|
2024-10-08 |
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ngs-tools
|
public |
Reusable tools for working with next-generation sequencing (NGS) data
|
2024-10-08 |
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mgikit
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public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2024-10-08 |
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viroconstrictor
|
public |
ViroConstrictor is a flexible pipeline for analysis of targeted viral sequencing data
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2024-10-08 |
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orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification
|
2024-10-08 |
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phylodm
|
public |
Efficient calculation of phylogenetic distance matrices.
|
2024-10-08 |
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mutamr
|
public |
Stripped down tool for generation of annotated vcf from paired-end reads in a CPHL.
|
2024-10-08 |
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breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-10-07 |
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vitap
|
public |
Viral Taxonomic Assignment Pipeline
|
2024-10-07 |
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r-cobrar
|
public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
|
2024-10-07 |
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pgscatalog.calc
|
public |
Libraries and applications for working with calculated polygenic scores
|
2024-10-07 |
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vclean
|
public |
vClean: Assessing the contamination of viral genomes
|
2024-10-07 |
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parebrick
|
public |
A bioinf tool for finding genome rearrangements in bacterial genomes.
|
2024-10-07 |
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mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
|
2024-10-07 |
|
heliano
|
public |
HELIANO: A fast and accurate tool for detection of Helitron-like elements
|
2024-10-07 |
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fastaptamer
|
public |
A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections
|
2024-10-07 |
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pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2024-10-07 |
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snakemake-storage-plugin-gcs
|
public |
A Snakemake storage plugin for Google Cloud Storage
|
2024-10-07 |
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mbgc
|
public |
A tool for compressing collection of genomes in FASTA format
|
2024-10-07 |
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pyliftover
|
public |
Pure-python implementation of UCSC ``liftOver`` genome coordinate conversion.
|
2024-10-07 |
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galaxy_sequence_utils
|
public |
Sequence Utilities from the Galaxy project
|
2024-10-07 |
|
orthofinder
|
public |
Accurate inference of orthogroups, orthologues, gene trees and rooted species tree made easy!
|
2024-10-07 |
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panaroo
|
public |
panaroo - an updated pipeline for pangenome investigation
|
2024-10-07 |
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cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2024-10-07 |
|
snakemake-interface-executor-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its executor plugins.
|
2024-10-06 |
|
genomad
|
public |
Identification of mobile genetic elements
|
2024-10-05 |
|
mashmap
|
public |
A fast approximate aligner for long DNA sequences.
|
2024-10-04 |
|
phables
|
public |
Phables: from fragmented assemblies to high-quality bacteriophage genomes
|
2024-10-04 |
|
snakemake-interface-report-plugins
|
public |
This package provides a stable interface for interactions between Snakemake and its report plugins.
|
2024-10-04 |
|
protgraph
|
public |
ProtGraph, a graph generator for proteins.
|
2024-10-04 |
|
snakemake-interface-common
|
public |
Common functions and classes for Snakemake and its plugins
|
2024-10-04 |
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tidk
|
public |
Identify and find telomeres, or telomeric repeats in a genome.
|
2024-10-04 |
|
skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2024-10-04 |
|
lighter
|
public |
Lighter is a kmer-based error correction method for whole genome sequencing data
|
2024-10-03 |
|
tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
|
2024-10-03 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
|
2024-10-03 |
