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odgi
|
public |
An optimized dynamic genome/graph implementation.
|
2024-10-16 |
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devider
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs.
|
2024-10-16 |
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rseqc
|
public |
QC package for RNA-seq data.
|
2024-10-16 |
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afpdb
|
public |
A Numpy-based PDB structure manipulation package
|
2024-10-15 |
|
seqfu
|
public |
DNA sequence utilities
|
2024-10-15 |
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easypqp
|
public |
EasyPQP: Simple library generation for OpenSWATH
|
2024-10-15 |
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smoothxg
|
public |
Local reconstruction of variation graphs using partial order alignment
|
2024-10-15 |
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seqwish
|
public |
Alignment to variation graph inducer
|
2024-10-15 |
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r-presto
|
public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
|
2024-10-15 |
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r-chromvarmotifs
|
public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
|
2024-10-15 |
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sourcepredict
|
public |
Classification and prediction of the origin of metagenomic samples.
|
2024-10-14 |
|
solvebio
|
public |
The SolveBio Python client
|
2024-10-14 |
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perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2024-10-14 |
|
thermorawfileparser
|
public |
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
|
2024-10-14 |
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meta_eukaryome_detect
|
public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
|
2024-10-14 |
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libopenms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2024-10-13 |
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openms-thirdparty
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2024-10-13 |
|
openms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2024-10-13 |
|
fragpipe
|
public |
Pipeline for comprehensive analysis of shotgun proteomics data
|
2024-10-12 |
|
sdrf-pipelines
|
public |
Translate, convert SDRF to configuration pipelines
|
2024-10-12 |
|
ntlink
|
public |
Genome assembly scaffolder using long reads and minimizers
|
2024-10-12 |
|
cenote-taker3
|
public |
Cenote-Taker 3: Discover and annotate the virome
|
2024-10-12 |
|
ntroot
|
public |
Ancestry inference from genomic data
|
2024-10-11 |
|
rna-seqc
|
public |
Fast, efficient RNA-Seq metrics for quality control and process optimization.
|
2024-10-11 |
|
haplomap
|
public |
Haplotype-based computational genetic mapping.
|
2024-10-11 |
|
medaka
|
public |
A tool to create consensus sequences and variant calls from nanopore sequencing data using neural networks.
|
2024-10-11 |
|
biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2024-10-11 |
|
tbtamr
|
public |
A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL
|
2024-10-11 |
|
earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2024-10-11 |
|
ena-webin-cli
|
public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
|
2024-10-11 |
|
sizemeup
|
public |
A simple tool to determine the genome size of an organism
|
2024-10-11 |
|
vamos
|
public |
VNTR annotation using efficient motif selection
|
2024-10-11 |
|
pypints
|
public |
Peak Identifier for Nascent Transcripts Starts (PINTS)
|
2024-10-11 |
|
vvv2_display
|
public |
Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr].
|
2024-10-10 |
|
pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2024-10-10 |
|
querynator
|
public |
Python package to query cancer variant databases
|
2024-10-10 |
|
versionix
|
public |
Get version of any tools.
|
2024-10-10 |
|
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-10-10 |
|
pantax
|
public |
Strain-level taxonomic classification of metagenomic data using pangenome graphs
|
2024-10-10 |
|
picard
|
public |
Java tools for working with NGS data in the BAM format
|
2024-10-10 |
|
picard-slim
|
public |
Java tools for working with NGS data in the BAM format.
|
2024-10-10 |
|
kmc
|
public |
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
|
2024-10-09 |
|
sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
|
2024-10-09 |
|
kmercamel
|
public |
KmerCamel🐫 - compressing k-mer sets using masked superstrings
|
2024-10-09 |
|
sequali
|
public |
Fast sequencing quality metrics
|
2024-10-09 |
|
orthologer
|
public |
Establish orthology among fasta files.
|
2024-10-09 |
|
patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
|
2024-10-09 |
|
delly
|
public |
Structural variant discovery by integrated paired-end and split-read analysis
|
2024-10-09 |
|
tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
|
2024-10-09 |
|
woltka
|
public |
versatile meta-omic data classifier
|
2024-10-09 |
