EGAP pipeline for genome assembly and QC analysis
EGAP (Entheome Genome Assembly Pipeline) is a versatile bioinformatics pipeline for hybrid genome assembly from Oxford Nanopore, Illumina, and PacBio data. It supports multiple input modes and assembly methods and determines the best based on multiple metrics: BUSCO Completeness (Single + Duplicated), Assembly Contig Count, Assembly N50, Assembly L50, and Assembly GC-content.
